import jalview.bin.Cache;
import jalview.io.*;
+import jalview.ws.params.ParamManager;
import java.awt.*;
import java.awt.datatransfer.*;
import java.awt.dnd.*;
import java.awt.event.*;
+import java.beans.PropertyChangeEvent;
+import java.beans.PropertyChangeListener;
import java.io.BufferedInputStream;
import java.io.BufferedOutputStream;
import java.io.File;
import javax.swing.event.MenuListener;
/**
- * DOCUMENT ME!
+ * Jalview Desktop
+ *
*
* @author $author$
* @version $Revision$
public class Desktop extends jalview.jbgui.GDesktop implements
DropTargetListener, ClipboardOwner, IProgressIndicator
{
- /** DOCUMENT ME!! */
+
+ private class JalviewChangeSupport implements PropertyChangeListener
+ {
+ public void propertyChange(PropertyChangeEvent evt)
+ {
+ // Handle change events - most are simply routed to other sources
+ changeSupport.firePropertyChange(evt);
+ }
+
+ /**
+ * change listeners are notified of changes to resources so they can update
+ * their state. E.g. - the 'services' property notifies when the available
+ * set of web service endpoints have changed.
+ */
+ private java.beans.PropertyChangeSupport changeSupport = new java.beans.PropertyChangeSupport(
+ this);
+
+ /**
+ * @param propertyName
+ * @param listener
+ * @see java.beans.PropertyChangeSupport#addPropertyChangeListener(java.lang.String,
+ * java.beans.PropertyChangeListener)
+ */
+ public void addJalviewPropertyChangeListener(String propertyName,
+ PropertyChangeListener listener)
+ {
+ changeSupport.addPropertyChangeListener(propertyName, listener);
+ }
+
+ /**
+ * @param listener
+ * @see java.beans.PropertyChangeSupport#addPropertyChangeListener(
+ * java.beans.PropertyChangeListener)
+ */
+ public void addJalviewPropertyChangeListener(
+ PropertyChangeListener listener)
+ {
+ changeSupport.addPropertyChangeListener(listener);
+ }
+
+ /*
+ * @param propertyName
+ *
+ * @param oldValue
+ *
+ * @param newValue
+ *
+ * @see
+ * java.beans.PropertyChangeSupport#firePropertyChange(java.lang.String,
+ * java.lang.Object, java.lang.Object) public void firePropertyChange(String
+ * propertyName, Object oldValue, Object newValue) {
+ * changeSupport.firePropertyChange(propertyName, oldValue, newValue); }
+ */
+
+ /**
+ * @param propertyName
+ * @param listener
+ * @see java.beans.PropertyChangeSupport#removePropertyChangeListener(java.lang.String,
+ * java.beans.PropertyChangeListener)
+ */
+ public void removeJalviewPropertyChangeListener(String propertyName,
+ PropertyChangeListener listener)
+ {
+ changeSupport.removePropertyChangeListener(propertyName, listener);
+ }
+
+ }
+
+ private JalviewChangeSupport changeSupport = new JalviewChangeSupport();
+
+ /**
+ * @param listener
+ * @see jalview.gui.Desktop.JalviewChangeSupport#addJalviewPropertyChangeListener(java.beans.PropertyChangeListener)
+ */
+ public void addJalviewPropertyChangeListener(
+ PropertyChangeListener listener)
+ {
+ changeSupport.addJalviewPropertyChangeListener(listener);
+ }
+
+ /**
+ * @param propertyName
+ * @param listener
+ * @see jalview.gui.Desktop.JalviewChangeSupport#addJalviewPropertyChangeListener(java.lang.String,
+ * java.beans.PropertyChangeListener)
+ */
+ public void addJalviewPropertyChangeListener(String propertyName,
+ PropertyChangeListener listener)
+ {
+ changeSupport.addJalviewPropertyChangeListener(propertyName, listener);
+ }
+
+ /**
+ * @param propertyName
+ * @param listener
+ * @see jalview.gui.Desktop.JalviewChangeSupport#removeJalviewPropertyChangeListener(java.lang.String,
+ * java.beans.PropertyChangeListener)
+ */
+ public void removeJalviewPropertyChangeListener(String propertyName,
+ PropertyChangeListener listener)
+ {
+ changeSupport.removeJalviewPropertyChangeListener(propertyName,
+ listener);
+ }
+
+ /** Singleton Desktop instance */
public static Desktop instance;
- // Need to decide if the Memory Usage is to be included in
- // Next release or not.
public static MyDesktopPane desktop;
- // public static JDesktopPane desktop;
-
static int openFrameCount = 0;
static final int xOffset = 30;
static int fileLoadingCount = 0;
+ class MyDesktopManager implements DesktopManager
+ {
+
+ private DesktopManager delegate;
+
+ public MyDesktopManager(DesktopManager delegate)
+ {
+ this.delegate = delegate;
+ }
+
+ public void activateFrame(JInternalFrame f)
+ {
+ try
+ {
+ delegate.activateFrame(f);
+ } catch (NullPointerException npe)
+ {
+ Point p = getMousePosition();
+ instance.showPasteMenu(p.x, p.y);
+ }
+ }
+
+ public void beginDraggingFrame(JComponent f)
+ {
+ delegate.beginDraggingFrame(f);
+ }
+
+ public void beginResizingFrame(JComponent f, int direction)
+ {
+ delegate.beginResizingFrame(f, direction);
+ }
+
+ public void closeFrame(JInternalFrame f)
+ {
+ delegate.closeFrame(f);
+ }
+
+ public void deactivateFrame(JInternalFrame f)
+ {
+ delegate.deactivateFrame(f);
+ }
+
+ public void deiconifyFrame(JInternalFrame f)
+ {
+ delegate.deiconifyFrame(f);
+ }
+
+ public void dragFrame(JComponent f, int newX, int newY)
+ {
+ delegate.dragFrame(f, newX, newY);
+ }
+
+ public void endDraggingFrame(JComponent f)
+ {
+ delegate.endDraggingFrame(f);
+ }
+
+ public void endResizingFrame(JComponent f)
+ {
+ delegate.endResizingFrame(f);
+ }
+
+ public void iconifyFrame(JInternalFrame f)
+ {
+ delegate.iconifyFrame(f);
+ }
+
+ public void maximizeFrame(JInternalFrame f)
+ {
+ delegate.maximizeFrame(f);
+ }
+
+ public void minimizeFrame(JInternalFrame f)
+ {
+ delegate.minimizeFrame(f);
+ }
+
+ public void openFrame(JInternalFrame f)
+ {
+ delegate.openFrame(f);
+ }
+
+ public void resizeFrame(JComponent f, int newX, int newY, int newWidth,
+ int newHeight)
+ {
+ delegate.resizeFrame(f, newX, newY, newWidth, newHeight);
+ }
+
+ public void setBoundsForFrame(JComponent f, int newX, int newY,
+ int newWidth, int newHeight)
+ {
+ delegate.setBoundsForFrame(f, newX, newY, newWidth, newHeight);
+ }
+
+ // All other methods, simply delegate
+
+ }
+
/**
* Creates a new Desktop object.
*/
// This line prevents Windows Look&Feel resizing all new windows to maximum
// if previous window was maximised
- desktop.setDesktopManager(new DefaultDesktopManager());
-
+ desktop.setDesktopManager(new MyDesktopManager(
+ new DefaultDesktopManager()));
Rectangle dims = getLastKnownDimensions("");
if (dims != null)
{
setBounds((int) (screenSize.width - 900) / 2,
(int) (screenSize.height - 650) / 2, 900, 650);
}
- jconsole = new Console(this);
- // immediately output essential build information
- System.out.println("Jalview Desktop "
+ jconsole = new Console(this, showjconsole);
+ // add essential build information
+ jconsole.setHeader("Jalview Desktop "
+ jalview.bin.Cache.getProperty("VERSION") + "\n"
+ "Build Date: "
+ jalview.bin.Cache.getDefault("BUILD_DATE", "unknown") + "\n"
}
});
- discoverer = new jalview.ws.jws1.Discoverer(); // Only gets started if gui is
// displayed.
// Thread off a new instance of the file chooser - this reduces the time it
// takes to open it later on.
public void paintComponent(Graphics g)
{
- if (showMemoryUsage && g != null)
+ if (showMemoryUsage && g != null && df != null)
{
if (percentUsage < 20)
g.setColor(Color.red);
return v_client;
}
+ /**
+ * flag set if jalview GUI is being operated programmatically
+ */
+ private boolean inBatchMode=false;
+
+ /**
+ * check if jalview GUI is being operated programmatically
+ * @return inBatchMode
+ */
+ public boolean isInBatchMode()
+ {
+ return inBatchMode;
+ }
+
+ /**
+ * set flag if jalview GUI is being operated programmatically
+ * @param inBatchMode
+ */
+ public void setInBatchMode(boolean inBatchMode)
+ {
+ this.inBatchMode = inBatchMode;
+ }
+
public void startServiceDiscovery()
{
- discoverer.start();
- new Thread(jalview.ws.jws2.Jws2Discoverer.getDiscoverer()).start();
+ startServiceDiscovery(false);
+ }
+
+ public void startServiceDiscovery(boolean blocking)
+ {
+ boolean alive = true;
+ Thread t0 = null, t1 = null, t2 = null;
+
+ // todo: changesupport handlers need to be transferred
+ if (discoverer == null)
+ {
+ discoverer = new jalview.ws.jws1.Discoverer();
+ // register PCS handler for desktop.
+ discoverer.addPropertyChangeListener(changeSupport);
+ }
+ if (Cache.getDefault("SHOW_JWS1_SERVICES", true))
+ {
+ (t0 = new Thread(discoverer)).start();
+ }
+
+ try
+ {
+ if (Cache.getDefault("SHOW_ENFIN_SERVICES", true))
+ {
+ // EnfinEnvision web service menu entries are rebuild every time the
+ // menu is shown, so no changeSupport events are needed.
+ jalview.ws.EnfinEnvision2OneWay.getInstance();
+ (t1 = new Thread(jalview.ws.EnfinEnvision2OneWay.getInstance()))
+ .start();
+ }
+ } catch (Exception e)
+ {
+ Cache.log
+ .info(
+ "Exception when trying to launch Envision2 workflow discovery.",
+ e);
+ Cache.log.info(e.getStackTrace());
+ }
+ if (Cache.getDefault("SHOW_JWS2_SERVICES", true))
+ {
+ jalview.ws.jws2.Jws2Discoverer.getDiscoverer()
+ .addPropertyChangeListener(changeSupport);
+ (t2 = new Thread(jalview.ws.jws2.Jws2Discoverer.getDiscoverer()))
+ .start();
+ }
+ if (blocking)
+ {
+ while (alive)
+ {
+ try
+ {
+ Thread.sleep(15);
+ } catch (Exception e)
+ {
+ }
+ alive = (t1 != null && t1.isAlive())
+ || (t2 != null && t2.isAlive())
+ || (t0 != null && t0.isAlive());
+ }
+ }
+ }
+
+ /**
+ * start a thread to open a URL in the configured browser. Pops up a warning dialog to the user if there is an exception when calling out to the browser to open the URL.
+ * @param url
+ */
+ public static void showUrl(final String url)
+ {
+ new Thread(new Runnable() {
+ public void run() {
+ try {
+ jalview.util.BrowserLauncher.openURL(url);
+ } catch (Exception ex)
+ {
+ JOptionPane
+ .showInternalMessageDialog(
+ Desktop.desktop,
+ "Unixers: Couldn't find default web browser."
+ + "\nAdd the full path to your browser in Preferences.",
+ "Web browser not found", JOptionPane.WARNING_MESSAGE);
+
+ ex.printStackTrace();
+ }
+ }
+ }).start();
}
+
+ public static WsParamSetManager wsparamManager = null;
+ public static ParamManager getUserParameterStore()
+ {
+ if (wsparamManager==null)
+ {
+ wsparamManager = new WsParamSetManager();
+ }
+ return wsparamManager;
+ }
+
}