*/
package jalview.gui;
-import jalview.api.AlignViewportI;
-import jalview.api.AlignmentViewPanel;
-import jalview.bin.Cache;
-import jalview.io.FileLoader;
-import jalview.io.FormatAdapter;
-import jalview.io.IdentifyFile;
-import jalview.io.JalviewFileChooser;
-import jalview.io.JalviewFileView;
-import jalview.jbgui.GSplitFrame;
-import jalview.jbgui.GStructureViewer;
-import jalview.structure.StructureSelectionManager;
-import jalview.util.ImageMaker;
-import jalview.util.MessageManager;
-import jalview.viewmodel.AlignmentViewport;
-import jalview.ws.params.ParamManager;
-
import java.awt.BorderLayout;
import java.awt.Color;
import java.awt.Dimension;
import javax.swing.event.MenuEvent;
import javax.swing.event.MenuListener;
+import jalview.api.AlignViewportI;
+import jalview.api.AlignmentViewPanel;
+import jalview.bin.Cache;
+import jalview.io.FileLoader;
+import jalview.io.FormatAdapter;
+import jalview.io.IdentifyFile;
+import jalview.io.JalviewFileChooser;
+import jalview.io.JalviewFileView;
+import jalview.jbgui.GSplitFrame;
+import jalview.jbgui.GStructureViewer;
+import jalview.structure.StructureSelectionManager;
+import jalview.util.ImageMaker;
+import jalview.util.MessageManager;
+import jalview.viewmodel.AlignmentViewport;
+import jalview.ws.params.ParamManager;
+
/**
* Jalview Desktop
*
{
dialogExecutor.shutdownNow();
}
-
+ closeAll_actionPerformed(null);
System.exit(0);
}
final java.io.File choice = chooser.getSelectedFile();
setProjectFile(choice);
- // TODO or move inside the new Thread?
- saveChimeraSessions(choice.getAbsolutePath());
-
new Thread(new Runnable()
{
public void run()
}
}
- /**
- * Request any open, linked Chimera sessions to save their state.
- *
- * @param jalviewProjectFilename
- * the filename of the Jalview project; Chimera session files should
- * be given distinct, but obviously related, names.
- */
- public void saveChimeraSessions(String jalviewProjectFilename)
- {
- int i = 0;
- for (JInternalFrame frame : getAllFrames())
- {
- if (frame instanceof ChimeraViewFrame)
- {
- /*
- * Construct a filename for the Chimera session by append _chimera<n>.py
- * to the Jalview project file name.
- */
- String chimeraPath = jalviewProjectFilename + "_chimera_" + i
- + ".py";
- ((ChimeraViewFrame) frame).saveSession(chimeraPath);
- i++;
- }
- }
- }
-
private void setProjectFile(File choice)
{
this.projectFile = choice;
public void registerHandler(final long id,
final IProgressIndicatorHandler handler)
{
- if (progressBarHandlers == null || !progressBars.contains(new Long(id)))
+ if (progressBarHandlers == null
+ || !progressBars.containsKey(new Long(id)))
{
throw new Error(
MessageManager