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[jalview.git] / src / jalview / gui / Desktop.java

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index 9b1bef3..af96ee8 100755 (executable)
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -551,6 +551,73 @@ public class Desktop extends jalview.jbgui.GDesktop
         }
     }
 
+    public void closeAll_actionPerformed(ActionEvent e)
+    {
+      JInternalFrame [] frames = desktop.getAllFrames();
+      for(int i=0; i<frames.length; i++)
+      {
+        try{
+        frames[i].setClosed(true);
+      }catch(java.beans.PropertyVetoException ex){}
+      }
+    }
+
+    public void raiseRelated_actionPerformed(ActionEvent e)
+    {
+      reorderAssociatedWindows(false);
+    }
+
+    public void minimizeAssociated_actionPerformed(ActionEvent e)
+    {
+      reorderAssociatedWindows(true);
+    }
+
+    void reorderAssociatedWindows(boolean minimize)
+    {
+      JInternalFrame[] frames = desktop.getAllFrames();
+      if (frames == null || frames.length<1)
+        return;
+
+      AlignViewport source = null, target = null;
+      if (frames[0] instanceof AlignFrame)
+        source = ( (AlignFrame) frames[0]).getCurrentView();
+      else if (frames[0] instanceof TreePanel)
+        source = ( (TreePanel) frames[0]).getViewPort();
+      else if (frames[0] instanceof PCAPanel)
+        source = ( (PCAPanel) frames[0]).av;
+      else if (frames[0].getContentPane() instanceof PairwiseAlignPanel)
+        source = ((PairwiseAlignPanel)frames[0].getContentPane()).av;
+
+
+      if (source != null)
+        for (int i = 0; i < frames.length; i++)
+        {
+          target = null;
+          if (frames[i] instanceof AlignFrame)
+            target = ( (AlignFrame) frames[i]).getCurrentView();
+          else if (frames[i] instanceof TreePanel)
+            target = ( (TreePanel) frames[i]).getViewPort();
+          else if (frames[i] instanceof PCAPanel)
+            target = ( (PCAPanel) frames[i]).av;
+          else if (frames[i].getContentPane() instanceof PairwiseAlignPanel)
+            target = ( (PairwiseAlignPanel) frames[i].getContentPane()).av;
+
+          if (source == target)
+          {
+            if(!minimize)
+              frames[i].toFront();
+            try
+            {
+              frames[i].setIcon(minimize);
+            }
+            catch (java.beans.PropertyVetoException ex)
+            {}
+          }
+        }
+    }
+
+
+
     /**
      * DOCUMENT ME!
      *
@@ -715,7 +782,7 @@ public class Desktop extends jalview.jbgui.GDesktop
       }
 
       af.alignPanels.clear();
-      af.closeMenuItem_actionPerformed(null);
+      af.closeMenuItem_actionPerformed(true);
 
     }
 
@@ -723,7 +790,7 @@ public class Desktop extends jalview.jbgui.GDesktop
     {
       source.viewport.gatherViewsHere = true;
       source.viewport.explodedPosition = source.getBounds();
-      JInternalFrame[] frames = Desktop.desktop.getAllFrames();
+      JInternalFrame[] frames = desktop.getAllFrames();
       String viewId = source.viewport.sequenceSetID;
 
       for (int t = 0; t < frames.length; t++)
@@ -747,7 +814,7 @@ public class Desktop extends jalview.jbgui.GDesktop
           if (gatherThis)
           {
             af.alignPanels.clear();
-            af.closeMenuItem_actionPerformed(null);
+            af.closeMenuItem_actionPerformed(true);
           }
         }
       }