VamsasMenu.setVisible(true);
vamsasLoad.setVisible(true);
}
-
+
}
/**
}
}
+ public void closeAll_actionPerformed(ActionEvent e)
+ {
+ JInternalFrame [] frames = desktop.getAllFrames();
+ for(int i=0; i<frames.length; i++)
+ {
+ try{
+ frames[i].setClosed(true);
+ }catch(java.beans.PropertyVetoException ex){}
+ }
+ }
+
+ public void raiseRelated_actionPerformed(ActionEvent e)
+ {
+ reorderAssociatedWindows(false);
+ }
+
+ public void minimizeAssociated_actionPerformed(ActionEvent e)
+ {
+ reorderAssociatedWindows(true);
+ }
+
+ void reorderAssociatedWindows(boolean minimize)
+ {
+ JInternalFrame[] frames = desktop.getAllFrames();
+ if (frames == null)
+ return;
+
+ AlignViewport source = null, target = null;
+ if (frames[0] instanceof AlignFrame)
+ source = ( (AlignFrame) frames[0]).getCurrentView();
+ else if (frames[0] instanceof TreePanel)
+ source = ( (TreePanel) frames[0]).getViewPort();
+ else if (frames[0] instanceof PCAPanel)
+ source = ( (PCAPanel) frames[0]).av;
+
+ if (source != null)
+ for (int i = 0; i < frames.length; i++)
+ {
+ target = null;
+ if (frames[i] instanceof AlignFrame)
+ target = ( (AlignFrame) frames[i]).getCurrentView();
+ else if (frames[i] instanceof TreePanel)
+ target = ( (TreePanel) frames[i]).getViewPort();
+ else if (frames[i] instanceof PCAPanel)
+ target = ( (PCAPanel) frames[i]).av;
+
+ if (source == target)
+ {
+ if(!minimize)
+ frames[i].toFront();
+ try
+ {
+ frames[i].setIcon(minimize);
+ }
+ catch (java.beans.PropertyVetoException ex)
+ {}
+ }
+ }
+ }
+
+
+
/**
* DOCUMENT ME!
*
int size = af.alignPanels.size();
if(size<2)
return;
- af.closeMenuItem_actionPerformed(null);
for(int i=0; i<size; i++)
{
ap.av.gatherViewsHere = false;
- PaintRefresher.Register(ap.seqPanel.seqCanvas, ap.av.getSequenceSetId());
- PaintRefresher.Register(ap.idPanel.idCanvas, ap.av.getSequenceSetId());
- PaintRefresher.Register(ap, ap.av.getSequenceSetId());
-
-
- newaf.viewport = ap.av;
addInternalFrame(newaf, af.getTitle(),
AlignFrame.DEFAULT_WIDTH,
AlignFrame.DEFAULT_HEIGHT);
}
+ af.alignPanels.clear();
+ af.closeMenuItem_actionPerformed(true);
+
}
public void gatherViews(AlignFrame source)
{
source.viewport.gatherViewsHere = true;
source.viewport.explodedPosition = source.getBounds();
- JInternalFrame[] frames = Desktop.desktop.getAllFrames();
+ JInternalFrame[] frames = desktop.getAllFrames();
String viewId = source.viewport.sequenceSetID;
for (int t = 0; t < frames.length; t++)
gatherThis = true;
ap.av.gatherViewsHere = false;
ap.av.explodedPosition = af.getBounds();
- source.addAlignmentPanel(ap);
+ source.addAlignmentPanel(ap, false);
}
}
+
if (gatherThis)
- af.closeMenuItem_actionPerformed(null);
+ {
+ af.alignPanels.clear();
+ af.closeMenuItem_actionPerformed(true);
+ }
}
}
*/
public void setVamsasUpdate(boolean b) {
jalview.bin.Cache.log.debug("Setting gui for Vamsas update "+(b ? "in progress" : "finished"));
- vamsasLoad.setVisible(!b);
+ vamsasLoad.setVisible(!b);
vamsasStop.setVisible(!b);
-
+
}
}