JAL-2773 renamed flags for clarity

[jalview.git] / src / jalview / gui / FeatureColourChooser.java

diff --git a/src/jalview/gui/FeatureColourChooser.java b/src/jalview/gui/FeatureColourChooser.java
index 396df04..d8db546 100644 (file)
--- a/src/jalview/gui/FeatureColourChooser.java
+++ b/src/jalview/gui/FeatureColourChooser.java
@@ -31,6 +31,8 @@ import java.awt.Dimension;
 import java.awt.FlowLayout;
 import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
+import java.awt.event.FocusAdapter;
+import java.awt.event.FocusEvent;
 import java.awt.event.MouseAdapter;
 import java.awt.event.MouseEvent;
 
@@ -145,7 +147,7 @@ public class FeatureColourChooser extends JalviewDialog
          */
         if (ap != null)
         {
-          ap.paintAlignment(true);
+          ap.paintAlignment(true, true);
         }
       }
     });
@@ -288,6 +290,14 @@ public class FeatureColourChooser extends JalviewDialog
         thresholdValue_actionPerformed();
       }
     });
+    thresholdValue.addFocusListener(new FocusAdapter()
+    {
+      @Override
+      public void focusLost(FocusEvent e)
+      {
+        thresholdValue_actionPerformed();
+      }
+    });
     slider.setPaintLabels(false);
     slider.setPaintTicks(true);
     slider.setBackground(Color.white);
@@ -386,9 +396,9 @@ public class FeatureColourChooser extends JalviewDialog
    * feature type, and repaints the alignment, and optionally the Overview
    * and/or structure viewer if open
    * 
-   * @param updateOverview
+   * @param updateStructsAndOverview
    */
-  void changeColour(boolean updateOverview)
+  void changeColour(boolean updateStructsAndOverview)
   {
     // Check if combobox is still adjusting
     if (adjusting)
@@ -497,7 +507,7 @@ public class FeatureColourChooser extends JalviewDialog
     }
     fr.setColour(type, acg);
     cs = acg;
-    ap.paintAlignment(updateOverview);
+    ap.paintAlignment(updateStructsAndOverview, updateStructsAndOverview);
   }
 
   @Override
@@ -529,7 +539,7 @@ public class FeatureColourChooser extends JalviewDialog
   void reset()
   {
     fr.setColour(type, oldcs);
-    ap.paintAlignment(true);
+    ap.paintAlignment(true, true);
     cs = null;
   }
 
@@ -555,7 +565,7 @@ public class FeatureColourChooser extends JalviewDialog
       /*
        * force repaint of any Overview window or structure
        */
-      ap.paintAlignment(true);
+      ap.paintAlignment(true, true);
     } catch (NumberFormatException ex)
     {
     }