Merge branch 'develop' into update_212_Dec_merge_with_21125_chamges

[jalview.git] / src / jalview / gui / FeatureEditor.java

diff --git a/src/jalview/gui/FeatureEditor.java b/src/jalview/gui/FeatureEditor.java
index 60f26e6..b53e57c 100644 (file)
--- a/src/jalview/gui/FeatureEditor.java
+++ b/src/jalview/gui/FeatureEditor.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.gui;
 
 import jalview.api.FeatureColourI;
@@ -10,7 +30,6 @@ import jalview.io.FeaturesFile;
 import jalview.schemes.FeatureColour;
 import jalview.util.ColorUtils;
 import jalview.util.MessageManager;
-import jalview.util.dialogrunner.RunResponse;
 
 import java.awt.BorderLayout;
 import java.awt.Color;
@@ -33,7 +52,10 @@ import javax.swing.JScrollPane;
 import javax.swing.JSpinner;
 import javax.swing.JTextArea;
 import javax.swing.JTextField;
+import javax.swing.SpinnerNumberModel;
 import javax.swing.SwingConstants;
+import javax.swing.event.ChangeEvent;
+import javax.swing.event.ChangeListener;
 import javax.swing.event.DocumentEvent;
 import javax.swing.event.DocumentListener;
 
@@ -168,10 +190,34 @@ public class FeatureEditor
     });
 
     description = new JTextArea(3, 25);
+    
     start = new JSpinner();
     end = new JSpinner();
     start.setPreferredSize(new Dimension(80, 20));
     end.setPreferredSize(new Dimension(80, 20));
+    
+    /*
+     * ensure that start can never be more than end
+     */
+    start.addChangeListener(new ChangeListener() 
+    {
+      @Override
+      public void stateChanged(ChangeEvent e)
+      {
+        Integer startVal = (Integer) start.getValue(); 
+        ((SpinnerNumberModel) end.getModel()).setMinimum(startVal);
+      }
+    });
+    end.addChangeListener(new ChangeListener() 
+    {
+      @Override
+      public void stateChanged(ChangeEvent e)
+      {
+        Integer endVal = (Integer) end.getValue(); 
+        ((SpinnerNumberModel) start.getModel()).setMaximum(endVal);
+      }
+    });
+
     final JLabel colour = new JLabel();
     colour.setOpaque(true);
     colour.setMaximumSize(new Dimension(30, 16));
@@ -196,7 +242,7 @@ public class FeatureEditor
               updateColourButton(mainPanel, colour, featureColour);
             };
           };
-          JalviewColourChooser.showColourChooser(Desktop.getDesktop(),
+          JalviewColourChooser.showColourChooser(Desktop.getDesktopPane(),
                   title, featureColour.getColour(), listener);
         }
         else
@@ -266,6 +312,8 @@ public class FeatureEditor
             group.setText(sf.getFeatureGroup());
             start.setValue(new Integer(sf.getBegin()));
             end.setValue(new Integer(sf.getEnd()));
+            ((SpinnerNumberModel) start.getModel()).setMaximum(sf.getEnd());
+            ((SpinnerNumberModel) end.getModel()).setMinimum(sf.getBegin());
 
             SearchResultsI highlight = new SearchResults();
             highlight.addResult(sequences.get(0), sf.getBegin(),
@@ -353,6 +401,9 @@ public class FeatureEditor
 
     start.setValue(new Integer(firstFeature.getBegin()));
     end.setValue(new Integer(firstFeature.getEnd()));
+    ((SpinnerNumberModel) start.getModel()).setMaximum(firstFeature.getEnd());
+    ((SpinnerNumberModel) end.getModel()).setMinimum(firstFeature.getBegin());
+
     description.setText(firstFeature.getDescription());
     featureColour = fr.getFeatureStyle(featureType);
     oldColour = featureColour;
@@ -374,18 +425,19 @@ public class FeatureEditor
    */
   public void showDialog()
   {
-    RunResponse okAction = forCreate ? getCreateAction() : getAmendAction();
-    RunResponse cancelAction = getCancelAction();
+         Runnable okAction = forCreate ? getCreateAction() : getAmendAction();
+         Runnable cancelAction = getCancelAction();
 
     /*
      * set dialog action handlers for OK (create/Amend) and Cancel options
      * also for Delete if applicable (when amending features)
      */
-    JvOptionPane dialog = JvOptionPane.newOptionDialog(Desktop.desktop)
-            .response(okAction).response(cancelAction);
+    JvOptionPane dialog = JvOptionPane.newOptionDialog(ap.alignFrame)
+            .setResponseHandler(0, okAction)
+            .setResponseHandler(2, cancelAction);
     if (!forCreate)
     {
-      dialog.response(getDeleteAction());
+      dialog.setResponseHandler(1, getDeleteAction());
     }
 
     String title = null;
@@ -409,7 +461,7 @@ public class FeatureEditor
 
     dialog.showInternalDialog(mainPanel, title,
             JvOptionPane.YES_NO_CANCEL_OPTION,
-            JvOptionPane.QUESTION_MESSAGE, null, options,
+            JvOptionPane.PLAIN_MESSAGE, null, options,
             MessageManager.getString("action.ok"));
   }
 
@@ -421,9 +473,9 @@ public class FeatureEditor
    * 
    * @return
    */
-  protected RunResponse getCancelAction()
+  protected Runnable getCancelAction()
   {
-    RunResponse okAction = new RunResponse(JvOptionPane.CANCEL_OPTION)
+       Runnable okAction = new Runnable()
     {
       @Override
       public void run()
@@ -445,12 +497,13 @@ public class FeatureEditor
    * 
    * @return
    */
-  protected RunResponse getCreateAction()
+  protected Runnable getCreateAction()
   {
-    RunResponse okAction = new RunResponse(JvOptionPane.OK_OPTION)
+       Runnable okAction = new Runnable()
     {
       boolean useLastDefaults = features.get(0).getType() == null;
 
+      @Override
       public void run()
       {
         final String enteredType = name.getText().trim();
@@ -503,10 +556,11 @@ public class FeatureEditor
    * 
    * @return
    */
-  protected RunResponse getDeleteAction()
+  protected Runnable getDeleteAction()
   {
-    RunResponse deleteAction = new RunResponse(JvOptionPane.NO_OPTION)
+         Runnable deleteAction = new Runnable()
     {
+      @Override
       public void run()
       {
         SequenceFeature sf = features.get(featureIndex);
@@ -605,16 +659,16 @@ public class FeatureEditor
    * 
    * @return
    */
-  protected RunResponse getAmendAction()
+  protected Runnable getAmendAction()
   {
-    RunResponse okAction = new RunResponse(JvOptionPane.OK_OPTION)
+       Runnable okAction = new Runnable()
     {
       boolean useLastDefaults = features.get(0).getType() == null;
   
       String featureType = name.getText();
   
       String featureGroup = group.getText();
-  
+      @Override
       public void run()
       {
         final String enteredType = name.getText().trim();