JAL-2359 add Window menu entry only after all danger of error is passed

[jalview.git] / src / jalview / gui / FeatureRenderer.java

diff --git a/src/jalview/gui/FeatureRenderer.java b/src/jalview/gui/FeatureRenderer.java
index 727c13b..ae911ed 100644 (file)
--- a/src/jalview/gui/FeatureRenderer.java
+++ b/src/jalview/gui/FeatureRenderer.java
@@ -22,6 +22,7 @@ package jalview.gui;
 
 import jalview.api.FeatureColourI;
 import jalview.datamodel.SearchResults;
+import jalview.datamodel.SearchResultsI;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.schemes.FeatureColour;
@@ -173,7 +174,8 @@ public class FeatureRenderer extends
     {
       panel = new JPanel(new GridLayout(4, 1));
       tmp = new JPanel();
-      tmp.add(new JLabel(MessageManager.getString("label.select_feature")));
+      tmp.add(new JLabel(MessageManager.getString("label.select_feature")
+              + ":"));
       overlaps = new JComboBox();
       for (int i = 0; i < features.length; i++)
       {
@@ -199,7 +201,7 @@ public class FeatureRenderer extends
             start.setValue(new Integer(features[index].getBegin()));
             end.setValue(new Integer(features[index].getEnd()));
 
-            SearchResults highlight = new SearchResults();
+            SearchResultsI highlight = new SearchResults();
             highlight.addResult(sequences[0], features[index].getBegin(),
                     features[index].getEnd());
 
@@ -224,12 +226,13 @@ public class FeatureRenderer extends
 
     tmp = new JPanel();
     panel.add(tmp);
-    tmp.add(new JLabel(MessageManager.getString("label.name"), JLabel.RIGHT));
+    tmp.add(new JLabel(MessageManager.getString("label.name:"),
+            JLabel.RIGHT));
     tmp.add(name);
 
     tmp = new JPanel();
     panel.add(tmp);
-    tmp.add(new JLabel(MessageManager.getString("label.group") + ":",
+    tmp.add(new JLabel(MessageManager.getString("label.group:"),
             JLabel.RIGHT));
     tmp.add(source);
 
@@ -248,7 +251,7 @@ public class FeatureRenderer extends
     bigPanel.add(panel, BorderLayout.NORTH);
 
     panel = new JPanel();
-    panel.add(new JLabel(MessageManager.getString("label.description"),
+    panel.add(new JLabel(MessageManager.getString("label.description:"),
             JLabel.RIGHT));
     description.setFont(JvSwingUtils.getTextAreaFont());
     description.setLineWrap(true);
@@ -327,14 +330,14 @@ public class FeatureRenderer extends
             : MessageManager.formatMessage("label.amend_delete_features",
                     new String[] { sequences[0].getName() });
 
-    int reply = JOptionPane.showInternalOptionDialog(Desktop.desktop,
-            bigPanel, title, JOptionPane.YES_NO_CANCEL_OPTION,
-            JOptionPane.QUESTION_MESSAGE, null, options,
+    int reply = JvOptionPane.showInternalOptionDialog(Desktop.desktop,
+            bigPanel, title, JvOptionPane.YES_NO_CANCEL_OPTION,
+            JvOptionPane.QUESTION_MESSAGE, null, options,
             MessageManager.getString("action.ok"));
 
     jalview.io.FeaturesFile ffile = new jalview.io.FeaturesFile();
 
-    if (reply == JOptionPane.OK_OPTION && name.getText().length() > 0)
+    if (reply == JvOptionPane.OK_OPTION && name.getText().length() > 0)
     {
       // This ensures that the last sequence
       // is refreshed and new features are rendered
@@ -353,11 +356,11 @@ public class FeatureRenderer extends
     {
       SequenceFeature sf = features[featureIndex];
 
-      if (reply == JOptionPane.NO_OPTION)
+      if (reply == JvOptionPane.NO_OPTION)
       {
         sequences[0].getDatasetSequence().deleteFeature(sf);
       }
-      else if (reply == JOptionPane.YES_OPTION)
+      else if (reply == JvOptionPane.YES_OPTION)
       {
         sf.type = lastFeatureAdded;
         sf.featureGroup = lastFeatureGroupAdded;
@@ -380,7 +383,7 @@ public class FeatureRenderer extends
     else
     // NEW FEATURES ADDED
     {
-      if (reply == JOptionPane.OK_OPTION && lastFeatureAdded.length() > 0)
+      if (reply == JvOptionPane.OK_OPTION && lastFeatureAdded.length() > 0)
       {
         for (int i = 0; i < sequences.length; i++)
         {