import java.util.Hashtable;
import java.util.Iterator;
import java.util.List;
+import java.util.Locale;
import java.util.Map;
import java.util.Set;
import javax.swing.Icon;
import javax.swing.JButton;
import javax.swing.JCheckBox;
-import javax.swing.JCheckBoxMenuItem;
import javax.swing.JInternalFrame;
import javax.swing.JLabel;
import javax.swing.JLayeredPane;
transparency.setValue(100 - transparencyAsPercent);
inConstruction = incon;
}
+
/**
* Constructor
*
{
frame = new JInternalFrame();
frame.setContentPane(this);
+ frame.setFrameIcon(null);
Rectangle bounds = af.getFeatureSettingsGeometry();
String title;
if (af.getAlignPanels().size() > 1 || Desktop.getAlignmentPanels(
});
frame.setLayer(JLayeredPane.PALETTE_LAYER);
}
- inConstruction = false;
- }
+ inConstruction = false;
+ }
/**
* Sets the state of buttons to show complement features from viewport
change = null;
}
- /**
- * Constructs and shows a popup menu of possible actions on the selected row and
- * feature type
- *
- * @param rowSelected
- * @param type
- * @param typeCol
- * @param pt
- */
- protected void showPopupMenu(final int rowSelected, final String type, final Object typeCol, final Point pt)
+ /**
+ * Constructs and shows a popup menu of possible actions on the selected row
+ * and feature type
+ *
+ * @param rowSelected
+ * @param type
+ * @param typeCol
+ * @param pt
+ */
+ protected void showPopupMenu(final int rowSelected, final String type,
+ final Object typeCol, final Point pt)
{
JPopupMenu men = new JPopupMenu(MessageManager
.formatMessage("label.settings_for_param", new String[]
{ type }));
- final FeatureColourI featureColour = (FeatureColourI) typeCol;
-
- /*
- * menu option to select (or deselect) variable colour
- */
- final JCheckBoxMenuItem variableColourCB = new JCheckBoxMenuItem(
- MessageManager.getString("label.variable_colour"));
- variableColourCB.setSelected(!featureColour.isSimpleColour());
- men.add(variableColourCB);
-
- /*
- * checkbox action listener doubles up as listener to OK
- * from the variable colour / filters dialog
- */
- variableColourCB.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- if (e.getSource() == variableColourCB)
- {
- // BH 2018 for JavaScript because this is a checkbox
- men.setVisible(true);
- men.setVisible(false);
- if (featureColour.isSimpleColour())
- {
- /*
- * toggle simple colour to variable colour - show dialog
- */
- FeatureTypeSettings fc = new FeatureTypeSettings(fr, type);
- fc.addActionListener(this);
- }
- else
- {
- /*
- * toggle variable to simple colour - show colour chooser
- */
- String title = MessageManager
- .formatMessage("label.select_colour_for", type);
- ColourChooserListener listener = new ColourChooserListener()
- {
- @Override
- public void colourSelected(Color c)
- {
- table.setValueAt(new FeatureColour(c), rowSelected,
- COLOUR_COLUMN);
- table.validate();
- updateFeatureRenderer(
- ((FeatureTableModel) table.getModel()).getData(),
- false);
- }
- };
- JalviewColourChooser.showColourChooser(FeatureSettings.this,
- title, featureColour.getMaxColour(), listener);
- }
- }
- else
- {
- if (e.getSource() instanceof FeatureTypeSettings)
- {
- /*
- * update after OK in feature colour dialog; the updated
- * colour will have already been set in the FeatureRenderer
- */
- FeatureColourI fci = fr.getFeatureColours().get(type);
- table.setValueAt(fci, rowSelected, COLOUR_COLUMN);
- // BH 2018 setting a table value does not invalidate it.
- // System.out.println("FeatureSettings is valied" +
- // table.validate();
- }
- }
- }
- });
-
- men.addSeparator();
JMenuItem scr = new JMenuItem(
MessageManager.getString("label.sort_by_score"));
chooser.setDialogTitle(
MessageManager.getString("label.load_feature_colours"));
chooser.setToolTipText(MessageManager.getString("action.load"));
- chooser.setResponseHandler(0, new Runnable()
- {
- @Override
- public void run()
- {
- File file = chooser.getSelectedFile();
- load(file);
- }
+ chooser.setResponseHandler(0, () -> {
+ File file = chooser.getSelectedFile();
+ load(file);
});
chooser.showOpenDialog(this);
}
}
} catch (Exception ex)
{
- System.out.println("Error loading User Colour File\n" + ex);
+ jalview.bin.Console.outPrintln("Error loading User Colour File\n" + ex);
}
}
}
/**
- * close ourselves but leave any existing UI handlers (e.g a CDS/Protein tabbed
- * feature settings dialog) intact
+ * close ourselves but leave any existing UI handlers (e.g a CDS/Protein
+ * tabbed feature settings dialog) intact
*/
public void closeOldSettings()
{
}
});
- final String byScoreLabel = MessageManager.getString("label.seq_sort_by_score");
+ final String byScoreLabel = MessageManager
+ .getString("label.seq_sort_by_score");
JButton sortByScore = new JButton(byScoreLabel);
sortByScore.setFont(JvSwingUtils.getLabelFont());
sortByScore.addActionListener(new ActionListener()
}
}
});
- final String byDensityLabel = MessageManager.getString("label.sequence_sort_by_density");
+ final String byDensityLabel = MessageManager
+ .getString("label.sequence_sort_by_density");
JButton sortByDens = new JButton(byDensityLabel);
sortByDens.setFont(JvSwingUtils.getLabelFont());
sortByDens.addActionListener(new ActionListener()
}
}
});
- // Cancel for a SplitFrame should just revert changes to the currently displayed
+ // Cancel for a SplitFrame should just revert changes to the currently
+ // displayed
// settings. May want to do this for either or both - so need a splitview
// feature settings cancel/OK.
JButton cancel = new JButton(MessageManager
MessageManager.getString("label.transparency_tip"));
boolean nucleotide = af.getViewport().getAlignment().isNucleotide();
- String text = MessageManager.formatMessage("label.show_linked_features",
- nucleotide
- ? MessageManager.getString("label.protein")
- .toLowerCase()
- : "CDS");
+ String text = MessageManager
+ .formatMessage("label.show_linked_features",
+ nucleotide
+ ? MessageManager.getString("label.protein")
+ .toLowerCase(Locale.ROOT)
+ : "CDS");
showComplement = new JCheckBox(text);
showComplement.addActionListener(new ActionListener()
{
*
* @param fcol
* @param withHint
- * if true include 'click to edit' and similar text
+ * if true include 'click to edit' and similar text
* @return
*/
public static String getColorTooltip(FeatureColourI fcol,
{
Color newColor = gcol.getMaxColour();
comp.setBackground(newColor);
- // System.err.println("Width is " + w / 2);
+ // jalview.bin.Console.errPrintln("Width is " + w / 2);
Icon ficon = new FeatureIcon(gcol, comp.getBackground(), w, h, thr);
comp.setIcon(ficon);
// tt+="RGB value: Max (" + newColor.getRed() + ", "