import jalview.api.FeatureColourI;
import jalview.api.FeatureSettingsControllerI;
+import jalview.bin.Jalview;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
import jalview.datamodel.features.FeatureMatcher;
import jalview.schemes.FeatureColour;
import jalview.util.MessageManager;
import jalview.util.Platform;
-import jalview.util.dialogrunner.RunResponse;
import jalview.viewmodel.seqfeatures.FeatureRendererModel.FeatureSettingsBean;
import jalview.xml.binding.jalview.JalviewUserColours;
import jalview.xml.binding.jalview.JalviewUserColours.Colour;
table = new JTable()
{
+
+// @Override
+// public void repaint() {
+// System.out.println("FS repaint");
+// super.repaint();
+//
+// }
+//
+// @Override
+// public void repaint(long tm, int x, int y, int width, int height) {
+// System.out.println("FS repaint " + x + " " + y + " " + width + " " + height);
+// super.repaint(tm, x, y, width, height);
+//
+// }
+// @Override
+// public void invalidate() {
+// if (isValid())
+// System.out.println("FS invalidating ");
+// super.invalidate();
+// }
+//
+// @Override
+// public void validate() {
+// System.out.println("FS validating " + isValid());
+// super.validate();
+// }
+
@Override
public String getToolTipText(MouseEvent e)
{
table.getTableHeader().setFont(new Font("Verdana", Font.PLAIN, 12));
ToolTipManager.sharedInstance().registerComponent(table);
- table.setDefaultEditor(FeatureColour.class, new ColorEditor(this));
+ table.setDefaultEditor(FeatureColour.class, new ColorEditor());
table.setDefaultRenderer(FeatureColour.class, new ColorRenderer());
- table.setDefaultEditor(FeatureMatcherSet.class, new FilterEditor(this));
+ table.setDefaultEditor(FeatureMatcherSet.class, new FilterEditor());
table.setDefaultRenderer(FeatureMatcherSet.class, new FilterRenderer());
TableColumn colourColumn = new TableColumn(COLOUR_COLUMN, 75,
- new ColorRenderer(), new ColorEditor(this));
+ new ColorRenderer(), new ColorEditor());
table.addColumn(colourColumn);
TableColumn filterColumn = new TableColumn(FILTER_COLUMN, 75,
- new FilterRenderer(), new FilterEditor(this));
+ new FilterRenderer(), new FilterEditor());
table.addColumn(filterColumn);
table.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
if (evt.isPopupTrigger())
{
Object colour = table.getValueAt(selectedRow, COLOUR_COLUMN);
- popupSort(selectedRow, type, colour, fr.getMinMax(), evt.getX(),
- evt.getY());
+ showPopupMenu(selectedRow, type, colour, evt.getPoint());
}
else if (evt.getClickCount() == 2)
{
{
String type = (String) table.getValueAt(selectedRow, TYPE_COLUMN);
Object colour = table.getValueAt(selectedRow, COLOUR_COLUMN);
- popupSort(selectedRow, type, colour, fr.getMinMax(), evt.getX(),
- evt.getY());
+ showPopupMenu(selectedRow, type, colour, evt.getPoint());
}
}
});
data[i + direction] = temp;
}
updateFeatureRenderer(data);
- repaintTable();
+ table.repaint();
selectedRow = newRow;
}
}
inConstruction = false;
}
- protected void popupSort(final int rowSelected, final String type,
- final Object typeCol, final Map<String, float[][]> minmax, int x,
- int y)
+ /**
+ * Constructs and shows a popup menu of possible actions on the selected row and
+ * feature type
+ *
+ * @param rowSelected
+ * @param type
+ * @param typeCol
+ * @param pt
+ */
+ protected void showPopupMenu(final int rowSelected, final String type,
+ final Object typeCol, final Point pt)
{
final FeatureColourI featureColour = (FeatureColourI) typeCol;
.sortAlignmentByFeatureScore(Arrays.asList(new String[]
{ type }));
}
-
});
JMenuItem dens = new JMenuItem(
MessageManager.getString("label.sort_by_density"));
.sortAlignmentByFeatureDensity(Arrays.asList(new String[]
{ type }));
}
-
});
men.add(dens);
{
if (e.getSource() == variableColourCB)
{
+ men.setVisible(true); // BH 2018 for JavaScript because this is a checkbox
+ men.setVisible(false); // BH 2018 for JavaScript because this is a checkbox
if (featureColour.isSimpleColour())
{
/*
/*
* toggle variable to simple colour - show colour chooser
*/
- String title = MessageManager.getString("label.select_colour");
+ String title = MessageManager.formatMessage("label.select_colour_for", type);
ColourChooserListener listener = new ColourChooserListener()
{
@Override
JalviewColourChooser.showColourChooser(me, title, featureColour.getMaxColour(), listener);
}
}
- else {
+ else
+ {
if (e.getSource() instanceof FeatureTypeSettings)
{
/*
*/
FeatureColourI fci = fr.getFeatureColours().get(type);
table.setValueAt(fci, rowSelected, COLOUR_COLUMN);
- table.validate();
+ // BH 2018 setting a table value does not invalidate it.
+ System.out.println("FeatureSettings is valied" + table.isValid());
+// table.validate();
}
}
}
-
});
JMenuItem selCols = new JMenuItem(
men.add(clearCols);
men.add(hideCols);
men.add(hideOtherCols);
- men.show(table, x, y);
+ men.show(table, pt.x, pt.y);
}
@Override
chooser.setDialogTitle(
MessageManager.getString("label.load_feature_colours"));
chooser.setToolTipText(MessageManager.getString("action.load"));
- chooser.response(new RunResponse(JalviewFileChooser.APPROVE_OPTION){
-
- @Override
- public void run() {
- File file = chooser.getSelectedFile();
- load(file);
- }});
+ chooser.setResponseHandler(0, new Runnable()
+ {
+ @Override
+ public void run()
+ {
+ File file = chooser.getSelectedFile();
+ load(file);
+ }
+ });
chooser.showOpenDialog(this);
}
.getData();
ensureOrder(data);
updateFeatureRenderer(data, false);
- repaintTable();
+ table.repaint();
}
} catch (Exception ex)
{
data[i][SHOW_COLUMN] = !(Boolean) data[i][SHOW_COLUMN];
}
updateFeatureRenderer(data, true);
- repaintTable();
+ table.repaint();
}
public void orderByAvWidth()
}
updateFeatureRenderer(data, false);
- repaintTable();
+ table.repaint();
}
-
- private void repaintTable() {
- // BH 2018
- // Here is a needed intervention
- // because generally we don't "repaint"
- // the table. We re-create the HTML divs
- // that is associated with it. A better
- // way to do this would be to fire a property change.
-
- @SuppressWarnings("unused")
- TableUI ui = table.getUI();
- /**
- * @j2sNative ui.repaintTable$();
- */
- {
- table.repaint();
- }
- }
-
-public void close()
+ public void close()
{
try
{
renderGraduatedColor(comp, gcol, w, h);
}
- class ColorEditor extends AbstractCellEditor
+ @SuppressWarnings("serial")
+class ColorEditor extends AbstractCellEditor
implements TableCellEditor, ActionListener
{
- FeatureSettings me;
+// FeatureSettings me;
FeatureColourI currentColor;
int rowSelected = 0;
- public ColorEditor(FeatureSettings fs)
+ public ColorEditor()
{
- this.me = fs;
// Set up the editor (from the table's point of view),
// which is a button.
// This button brings up the color chooser dialog,
/*
* simple colour chooser
*/
- String ttl = MessageManager.getString("label.select_colour");
- ColourChooserListener listener = new ColourChooserListener() {
+ String ttl = MessageManager.formatMessage("label.select_colour_for", type);
+ ColourChooserListener listener = new ColourChooserListener()
+ {
@Override
public void colourSelected(Color c)
{
currentColor = new FeatureColour(c);
- me.table.setValueAt(currentColor, rowSelected, COLOUR_COLUMN);
+ table.setValueAt(currentColor, rowSelected, COLOUR_COLUMN);
+ fireEditingStopped();
}
+ @Override
+ public void cancel()
+ {
+ fireEditingStopped();
+ }
};
JalviewColourChooser.showColourChooser(button, ttl, currentColor.getColour(), listener);
}
/*
* variable colour and filters dialog
*/
- chooser = new FeatureTypeSettings(me.fr, type);
- /**
- * @j2sNative
- */
+ chooser = new FeatureTypeSettings(fr, type);
+ if (!Jalview.isJS())
{
chooser.setRequestFocusEnabled(true);
chooser.requestFocus();
}
chooser.addActionListener(this);
- // Make the renderer reappear.
fireEditingStopped();
}
}
* update table data without triggering updateFeatureRenderer
*/
currentColor = fr.getFeatureColours().get(type);
- FeatureMatcherSetI currentFilter = me.fr.getFeatureFilter(type);
+ FeatureMatcherSetI currentFilter = fr.getFeatureFilter(type);
if (currentFilter == null)
{
currentFilter = new FeatureMatcherSet();
.getData()[rowSelected];
data[COLOUR_COLUMN] = currentColor;
data[FILTER_COLUMN] = currentFilter;
-
fireEditingStopped();
- me.table.validate();
+ // SwingJS needs an explicit repaint() here,
+ // rather than relying upon no validation having
+ // occurred since the stopEditing call was made.
+ // Its laying out has not been stopped by the modal frame
+ table.validate();
+ table.repaint();
}
}
{
currentColor = (FeatureColourI) value;
this.rowSelected = row;
- type = me.table.getValueAt(row, TYPE_COLUMN).toString();
+ type = table.getValueAt(row, TYPE_COLUMN).toString();
button.setOpaque(true);
- button.setBackground(me.getBackground());
+ button.setBackground(getBackground());
if (!currentColor.isSimpleColour())
{
JLabel btn = new JLabel();
* as display text). On click in the cell, opens the Feature Display Settings
* dialog at the Filters tab.
*/
- class FilterEditor extends AbstractCellEditor
+ @SuppressWarnings("serial")
+class FilterEditor extends AbstractCellEditor
implements TableCellEditor, ActionListener
{
- FeatureSettings me;
FeatureMatcherSetI currentFilter;
int rowSelected = 0;
- public FilterEditor(FeatureSettings me)
+ public FilterEditor()
{
- this.me = me;
button = new JButton();
button.setActionCommand(EDIT);
button.addActionListener(this);
{
if (button == e.getSource())
{
- FeatureTypeSettings chooser = new FeatureTypeSettings(me.fr, type);
+ FeatureTypeSettings chooser = new FeatureTypeSettings(fr, type);
chooser.addActionListener(this);
chooser.setRequestFocusEnabled(true);
chooser.requestFocus();
* update table data without triggering updateFeatureRenderer
*/
FeatureColourI currentColor = fr.getFeatureColours().get(type);
- currentFilter = me.fr.getFeatureFilter(type);
+ currentFilter = fr.getFeatureFilter(type);
if (currentFilter == null)
{
currentFilter = new FeatureMatcherSet();
}
+
Object[] data = ((FeatureTableModel) table.getModel())
.getData()[rowSelected];
data[COLOUR_COLUMN] = currentColor;
data[FILTER_COLUMN] = currentFilter;
fireEditingStopped();
- me.table.validate();
+ // SwingJS needs an explicit repaint() here,
+ // rather than relying upon no validation having
+ // occurred since the stopEditing call was made.
+ // Its laying out has not been stopped by the modal frame
+ table.validate();
+ table.repaint();
}
}
{
currentFilter = (FeatureMatcherSetI) value;
this.rowSelected = row;
- type = me.table.getValueAt(row, TYPE_COLUMN).toString();
+ type = table.getValueAt(row, TYPE_COLUMN).toString();
button.setOpaque(true);
- button.setBackground(me.getBackground());
+ button.setBackground(getBackground());
button.setText(currentFilter.toString());
button.setIcon(null);
return button;
g.fillRect(s1, 0, e1 - s1, height);
}
g.setColor(gcol.getMaxColour());
- g.fillRect(0, e1, width - e1, height);
+// g.fillRect(0, e1, width - e1, height); // BH 2018
+ g.fillRect(e1, 0, width - e1, height);
}
}
}