/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
import jalview.datamodel.SequenceI;
import jalview.jbgui.GFinder;
import jalview.util.MessageManager;
+import jalview.viewmodel.AlignmentViewport;
import java.awt.event.ActionEvent;
import java.util.Vector;
private static final int WIDTH = 340;
- AlignViewport av;
+ AlignmentViewport av;
AlignmentPanel ap;
* @param viewport
* @param alignPanel
*/
- public Finder(AlignViewport viewport, AlignmentPanel alignPanel)
+ public Finder(AlignmentViewport viewport, AlignmentPanel alignPanel)
{
av = viewport;
ap = alignPanel;
jalview.analysis.Finder finder = new jalview.analysis.Finder(
av.getAlignment(), av.getSelectionGroup(), seqIndex, resIndex);
finder.setCaseSensitive(caseSensitive.isSelected());
+ finder.setIncludeDescription(searchDescription.isSelected());
+
finder.setFindAll(findAll);
finder.find(searchString); // returns true if anything was actually found