searchResults.getResultEnd(i), "Search Results");
}
- if (ap.seqPanel.seqCanvas.getFeatureRenderer().amendFeatures(seqs,
+ if (ap.getSeqPanel().seqCanvas.getFeatureRenderer().amendFeatures(seqs,
features, true, ap))
{
ap.alignFrame.showSeqFeatures.setSelected(true);
jalview.analysis.Finder finder = new jalview.analysis.Finder(
av.getAlignment(), av.getSelectionGroup(), seqIndex, resIndex);
finder.setCaseSensitive(caseSensitive.isSelected());
+ finder.setIncludeDescription(searchDescription.isSelected());
+
finder.setFindAll(findAll);
finder.find(searchString); // returns true if anything was actually found
if ((idMatch.size() > 0))
{
haveResults = true;
- ap.idPanel.highlightSearchResults(idMatch);
+ ap.getIdPanel().highlightSearchResults(idMatch);
}
else
{
- ap.idPanel.highlightSearchResults(null);
+ ap.getIdPanel().highlightSearchResults(null);
}
if (searchResults.getSize() > 0)