*
* @param gg
* DOCUMENT ME!
+ * @param hiddenRows
+ * true - check and display hidden row marker if need be
* @param s
* DOCUMENT ME!
* @param i
* @param ypos
* DOCUMENT ME!
*/
- public void drawIdString(Graphics2D gg, SequenceI s, int i, int starty,
- int ypos)
+ public void drawIdString(Graphics2D gg, boolean hiddenRows, SequenceI s,
+ int i, int starty, int ypos)
{
int xPos = 0;
int panelWidth = getWidth();
gg.drawString(s.getDisplayId(av.getShowJVSuffix()), xPos,
(((i - starty + 1) * charHeight) + ypos) - (charHeight / 5));
- if (av.hasHiddenRows() && av.getShowHiddenMarkers())
+ if (hiddenRows)
{
drawMarker(i, starty, ypos);
}
* @param g
* DOCUMENT ME!
*/
+ @Override
public void paintComponent(Graphics g)
{
g.setColor(Color.white);
Color currentColor = Color.white;
Color currentTextColor = Color.black;
+ final boolean doHiddenCheck = av.isDisplayReferenceSeq()
+ || av.hasHiddenRows(), hiddenRows = av.hasHiddenRows();
+
if (av.getWrapAlignment())
{
int maxwidth = av.getAlignment().getWidth();
for (int i = starty; i < alheight; i++)
{
SequenceI s = av.getAlignment().getSequenceAt(i);
- if (av.isDisplayReferenceSeq() || av.hasHiddenRows())
+ if (doHiddenCheck)
{
setHiddenFont(s);
}
gg.setFont(getIdfont());
}
- drawIdString(gg, s, i, 0, ypos);
+ drawIdString(gg, hiddenRows, s, i, 0, ypos);
}
if (labels != null && av.isShowAnnotation())
continue;
}
- if (av.isDisplayReferenceSeq() || av.hasHiddenRows())
+ if (doHiddenCheck)
{
setHiddenFont(sequence);
}
(((i - starty) * av.getCharHeight()) + av.getCharHeight())
- (av.getCharHeight() / 5));
- if (av.hasHiddenRows() && av.getShowHiddenMarkers())
+ if (hiddenRows)
{
drawMarker(i, starty, 0);
}
if (below)
{
gg.fillPolygon(
- new int[]
- { getWidth() - av.getCharHeight(),
- getWidth() - av.getCharHeight(),
- getWidth() }, new int[]
- {
+ new int[] { getWidth() - av.getCharHeight(),
+ getWidth() - av.getCharHeight(), getWidth() },
+ new int[] {
(i - starty) * av.getCharHeight() + yoffset,
(i - starty) * av.getCharHeight() + yoffset
+ av.getCharHeight() / 4,
if (above)
{
gg.fillPolygon(
- new int[]
- { getWidth() - av.getCharHeight(),
- getWidth() - av.getCharHeight(),
- getWidth() }, new int[]
- {
+ new int[] { getWidth() - av.getCharHeight(),
+ getWidth() - av.getCharHeight(), getWidth() },
+ new int[] {
(i - starty + 1) * av.getCharHeight() + yoffset,
(i - starty + 1) * av.getCharHeight() + yoffset
- av.getCharHeight() / 4,
Font bold = new Font(av.getFont().getName(), Font.BOLD, av.getFont()
.getSize());
- if (av.isHiddenRepSequence(seq))
+ if (av.isReferenceSeq(seq) || av.isHiddenRepSequence(seq))
{
gg.setFont(bold);
}