colours in viewport

[jalview.git] / src / jalview / gui / IdCanvas.java

diff --git a/src/jalview/gui/IdCanvas.java b/src/jalview/gui/IdCanvas.java
index 32cbfb5..c9ed305 100755 (executable)
--- a/src/jalview/gui/IdCanvas.java
+++ b/src/jalview/gui/IdCanvas.java
@@ -86,7 +86,7 @@ public class IdCanvas extends JPanel
         }\r
         else\r
         {\r
-            gg.setColor(s.getColor());\r
+            gg.setColor(av.getSequenceColour(s));\r
             gg.fillRect(0, ((i - starty) * charHeight) + ypos, getWidth(),\r
                 charHeight);\r
             gg.setColor(Color.black);\r
@@ -310,7 +310,7 @@ public class IdCanvas extends JPanel
                 }\r
                 else\r
                 {\r
-                  currentColor = sequence.getColor();\r
+                  currentColor = av.getSequenceColour(sequence);\r
                   currentTextColor = Color.black;\r
                 }\r
 \r