javatidy

[jalview.git] / src / jalview / gui / IdPanel.java

diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java
index fa97215..0480ffa 100755 (executable)
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -1,18 +1,18 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
  * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
- * 
+ *
  * This file is part of Jalview.
- * 
+ *
  * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
+ * modify it under the terms of the GNU General Public License
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  * PURPOSE.  See the GNU General Public License for more details.
- * 
+ *
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  */
 package jalview.gui;
@@ -29,7 +29,7 @@ import jalview.util.UrlLink;
 
 /**
  * DOCUMENT ME!
- * 
+ *
  * @author $author$
  * @version $Revision$
  */
@@ -55,7 +55,7 @@ public class IdPanel extends JPanel implements MouseListener,
 
   /**
    * Creates a new IdPanel object.
-   * 
+   *
    * @param av
    *          DOCUMENT ME!
    * @param parent
@@ -77,10 +77,11 @@ public class IdPanel extends JPanel implements MouseListener,
 
   /**
    * DOCUMENT ME!
-   * 
+   *
    * @param e
    *          DOCUMENT ME!
    */
+  @Override
   public void mouseMoved(MouseEvent e)
   {
     SeqPanel sp = alignPanel.seqPanel;
@@ -147,10 +148,11 @@ public class IdPanel extends JPanel implements MouseListener,
 
   /**
    * DOCUMENT ME!
-   * 
+   *
    * @param e
    *          DOCUMENT ME!
    */
+  @Override
   public void mouseDragged(MouseEvent e)
   {
     mouseDragging = true;
@@ -170,6 +172,7 @@ public class IdPanel extends JPanel implements MouseListener,
     alignPanel.paintAlignment(true);
   }
 
+  @Override
   public void mouseWheelMoved(MouseWheelEvent e)
   {
     e.consume();
@@ -185,10 +188,11 @@ public class IdPanel extends JPanel implements MouseListener,
 
   /**
    * DOCUMENT ME!
-   * 
+   *
    * @param e
    *          DOCUMENT ME!
    */
+  @Override
   public void mouseClicked(MouseEvent e)
   {
     if (e.getClickCount() < 2)
@@ -257,10 +261,11 @@ public class IdPanel extends JPanel implements MouseListener,
 
   /**
    * DOCUMENT ME!
-   * 
+   *
    * @param e
    *          DOCUMENT ME!
    */
+  @Override
   public void mouseEntered(MouseEvent e)
   {
     if (scrollThread != null)
@@ -271,10 +276,11 @@ public class IdPanel extends JPanel implements MouseListener,
 
   /**
    * DOCUMENT ME!
-   * 
+   *
    * @param e
    *          DOCUMENT ME!
    */
+  @Override
   public void mouseExited(MouseEvent e)
   {
     if (av.getWrapAlignment())
@@ -296,10 +302,11 @@ public class IdPanel extends JPanel implements MouseListener,
 
   /**
    * DOCUMENT ME!
-   * 
+   *
    * @param e
    *          DOCUMENT ME!
    */
+  @Override
   public void mousePressed(MouseEvent e)
   {
     if (e.getClickCount() == 2)
@@ -359,7 +366,7 @@ public class IdPanel extends JPanel implements MouseListener,
 
   /**
    * DOCUMENT ME!
-   * 
+   *
    * @param seq
    *          DOCUMENT ME!
    */
@@ -373,7 +380,7 @@ public class IdPanel extends JPanel implements MouseListener,
 
   /**
    * DOCUMENT ME!
-   * 
+   *
    * @param start
    *          DOCUMENT ME!
    * @param end
@@ -410,10 +417,11 @@ public class IdPanel extends JPanel implements MouseListener,
 
   /**
    * DOCUMENT ME!
-   * 
+   *
    * @param e
    *          DOCUMENT ME!
    */
+  @Override
   public void mouseReleased(MouseEvent e)
   {
     if (scrollThread != null)
@@ -429,7 +437,7 @@ public class IdPanel extends JPanel implements MouseListener,
 
   /**
    * DOCUMENT ME!
-   * 
+   *
    * @param list
    *          DOCUMENT ME!
    */
@@ -442,7 +450,7 @@ public class IdPanel extends JPanel implements MouseListener,
       return;
     }
 
-    int index = av.getAlignment().findIndex((SequenceI) list.get(0));
+    int index = av.getAlignment().findIndex(list.get(0));
 
     // do we need to scroll the panel?
     if ((av.getStartSeq() > index) || (av.getEndSeq() < index))
@@ -469,6 +477,7 @@ public class IdPanel extends JPanel implements MouseListener,
       running = false;
     }
 
+    @Override
     public void run()
     {
       running = true;