/*\r
* Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
*\r
* This program is free software; you can redistribute it and/or\r
* modify it under the terms of the GNU General Public License\r
*/\r
public void mouseMoved(MouseEvent e)\r
{\r
- int y = e.getY();\r
-\r
- if (av.getWrapAlignment())\r
- {\r
- y = getWrappedY(y);\r
- }\r
-\r
- final int seq = av.getIndex(y);\r
- if(seq!=-1)\r
+ int seq = Math.max(0, alignPanel.seqPanel.findSeq(e));\r
+ if(seq>-1 && seq<av.alignment.getHeight())\r
{\r
SequenceI sequence = av.alignment.getSequenceAt(seq);\r
StringBuffer tip = new StringBuffer("<html>");\r
tip.append(sequence.getDisplayId(true));\r
- if (av.alignment.getSequenceAt(seq).getDescription() != null)\r
+ if (sequence.getDescription() != null)\r
{\r
tip.append("<table width=250 border=0><tr><td><i>");\r
- tip.append(av.alignment.getSequenceAt(seq).getDescription());\r
+ tip.append(sequence.getDescription());\r
\r
//ADD NON POSITIONAL SEQUENCE INFO\r
SequenceFeature [] features = sequence.getDatasetSequence().getSequenceFeatures();\r
}\r
}\r
}\r
-\r
tip.append("</i></td></tr></table>");\r
}\r
- tip.append("</html>");\r
- setToolTipText(tip.toString());\r
- }\r
\r
- if(av.hasHiddenRows)\r
- {\r
- if(av.adjustForHiddenSeqs(seq) -\r
- av.adjustForHiddenSeqs(seq-1)>1)\r
+ DBRefEntry[] dbrefs = sequence.getDatasetSequence().getDBRef();\r
+ if (dbrefs != null)\r
{\r
- JPopupMenu pop = new JPopupMenu();\r
- JMenuItem item = new JMenuItem("Reveal");\r
- item.addActionListener(new ActionListener()\r
+ tip.append("<i>");\r
+ for (int i = 0; i < dbrefs.length; i++)\r
{\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- av.showSequence(seq);\r
- alignPanel.repaint();\r
- if(alignPanel.overviewPanel!=null)\r
- alignPanel.overviewPanel.updateOverviewImage();\r
- }\r
- });\r
- pop.add(item);\r
- pop.show(this, e.getX(), e.getY());\r
+ tip.append("<br>");\r
+ tip.append(dbrefs[i].getSource() + " "\r
+ + dbrefs[i].getAccessionId());\r
+ }\r
+ tip.append("</i>");\r
}\r
- }\r
- }\r
-\r
-\r
- int getWrappedY(int y)\r
- {\r
- int hgap = av.charHeight;\r
- if (av.scaleAboveWrapped)\r
- hgap += av.charHeight;\r
\r
- return y - hgap;\r
+ tip.append("</html>");\r
+ setToolTipText(tip.toString());\r
+ }\r
}\r
\r
\r
{\r
mouseDragging = true;\r
\r
- int y = e.getY();\r
-\r
- if (av.getWrapAlignment())\r
- {\r
- y = getWrappedY(y);\r
- }\r
-\r
- int seq = av.getIndex(y);\r
-\r
- if (seq < 0)\r
- {\r
- return;\r
- }\r
+ int seq = Math.max(0, alignPanel.seqPanel.findSeq(e));\r
\r
if (seq < lastid)\r
{\r
if (links == null || links.size() < 1)\r
return;\r
\r
- int y = e.getY();\r
-\r
- if (av.getWrapAlignment())\r
- {\r
- y = getWrappedY(y);\r
- }\r
+ int seq = alignPanel.seqPanel.findSeq(e);\r
\r
//DEFAULT LINK IS FIRST IN THE LINK LIST\r
- int seq = av.getIndex(y);\r
- if(seq==-1)\r
- return;\r
\r
String id = av.getAlignment().getSequenceAt(seq).getName();\r
if (id.indexOf("|") > -1)\r
return;\r
}\r
\r
- int y = e.getY();\r
-\r
- if (av.getWrapAlignment())\r
- {\r
- y = getWrappedY(y);\r
- }\r
+ int seq = alignPanel.seqPanel.findSeq(e);\r
\r
- int seq = av.getIndex(y);\r
-\r
- if (seq == -1)\r
- {\r
- return;\r
- }\r
\r
if (javax.swing.SwingUtilities.isRightMouseButton(e))\r
{\r
jalview.gui.PopupMenu pop = new jalview.gui.PopupMenu(alignPanel,\r
(Sequence) av.getAlignment().getSequenceAt(seq),\r
Preferences.sequenceURLLinks);\r
- pop.show(this, e.getX(), y);\r
+ pop.show(this, e.getX(), e.getY());\r
\r
return;\r
}\r
\r
- /* if (!e.isControlDown() && !e.isShiftDown() &&\r
- (av.alignment.findGroup(av.alignment.getSequenceAt(seq)) != null))\r
- {\r
- System.out.println("no modifiers");\r
- SequenceGroup selection = new SequenceGroup();\r
- SequenceGroup sg = av.alignment.findGroup(av.alignment.getSequenceAt(\r
- seq));\r
- selection.setStartRes(0);\r
- selection.setEndRes(av.alignment.getWidth() - 1);\r
-\r
- for (int i = 0; i < sg.getSize(); i++)\r
- {\r
- selection.addSequence(sg.getSequenceAt(i), true);\r
- }\r
-\r
- av.setSelectionGroup(selection);\r
\r
- return;\r
- }*/\r
\r
if ((av.getSelectionGroup() == null) ||\r
((!e.isControlDown() && !e.isShiftDown()) && av.getSelectionGroup() != null))\r
}\r
\r
\r
-\r
if (e.isShiftDown() && (lastid != -1))\r
{\r
selectSeqs(lastid, seq);\r
*/\r
void selectSeqs(int start, int end)\r
{\r
- if(av.getSelectionGroup()==null)\r
+ if(av.getSelectionGroup()==null)\r
return;\r
\r
+ if (end >= av.getAlignment().getHeight())\r
+ {\r
+ end = av.getAlignment().getHeight() - 1;\r
+ }\r
+\r
lastid = start;\r
\r
if (end < start)\r
}\r
\r
mouseDragging = false;\r
- PaintRefresher.Refresh(av.alignment);\r
+ PaintRefresher.Refresh(this, av.getSequenceSetId());\r
}\r
\r
/**\r
git://source.jalview.org / jalview.git / blobdiff