Modified for wrappingAlignment

[jalview.git] / src / jalview / gui / IdPanel.java

diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java
index 26d4199..0e528a2 100755 (executable)
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -17,10 +17,7 @@ public class IdPanel extends JPanel implements MouseListener, MouseMotionListene
   public    int            width;\r
   public    int            lastid;\r
 \r
-\r
-\r
-  boolean mouseDown;\r
-  boolean mouseUp;\r
+  SequenceGroup selectedSequenceGroup;\r
 \r
   public IdPanel(AlignViewport av, AlignmentPanel parent)\r
   {\r
@@ -36,91 +33,127 @@ public class IdPanel extends JPanel implements MouseListener, MouseMotionListene
   public void mouseMoved(MouseEvent e) {}\r
 \r
   public void selectSeqs(int start, int end) {\r
-     if (end < start) {\r
+     if (end < start)\r
+     {\r
        int tmp = start;\r
        start = end;\r
        end   = tmp;\r
      }\r
 \r
-     for (int i = start; i <= end; i++) {\r
+     for (int i = start; i <= end; i++)\r
+     {\r
        SequenceI pickedSeq = av.getAlignment().getSequenceAt(i);\r
-\r
-       if (av.getSelection().contains(pickedSeq)) {\r
+       if (av.getSelection().contains(pickedSeq))\r
+       {\r
          av.getSelection().removeElement(pickedSeq);\r
-       } else {\r
+         selectedSequenceGroup.deleteSequence(pickedSeq);\r
+       }\r
+       else\r
+       {\r
          av.getSelection().addElement(pickedSeq);\r
+         if(selectedSequenceGroup==null)\r
+         {\r
+           selectedSequenceGroup = new SequenceGroup();\r
+           av.setRubberbandGroup( selectedSequenceGroup );\r
+          // av.alignment.addGroup( selectedSequenceGroup );\r
+           selectedSequenceGroup.setStartRes(0);\r
+           selectedSequenceGroup.setEndRes( pickedSeq.getSequence().length());\r
+         }\r
+\r
+         selectedSequenceGroup.addSequence( pickedSeq );\r
        }\r
+\r
      }\r
 \r
+     alignPanel.seqPanel.seqCanvas.paintFlag=true;\r
+     alignPanel.repaint();\r
      repaint();\r
 \r
    }\r
 \r
   public void mouseDragged(MouseEvent e) {\r
     int y = e.getY();\r
-\r
+    if(av.getWrapAlignment())\r
+      y-=2*av.charHeight;\r
     int seq = av.getIndex(y);\r
 \r
-    if (mouseDown == true) {\r
-      if (seq < lastid) {\r
-        selectSeqs(lastid-1,seq);\r
-      } else if (seq > lastid) {\r
-         selectSeqs(lastid+1,seq);\r
-      }\r
-      lastid = seq;\r
-    }\r
+    if (seq < lastid)\r
+      selectSeqs(lastid - 1, seq);\r
+    else if (seq > lastid)\r
+      selectSeqs(lastid + 1, seq);\r
+\r
+    lastid = seq;\r
 \r
     return;\r
   }\r
 \r
-  public void mouseClicked(MouseEvent e) { }\r
+  public void mouseClicked(MouseEvent e)\r
+  {\r
+    if (e.getClickCount() == 2)\r
+    {\r
+       int y = e.getY();\r
+       if(av.getWrapAlignment())\r
+         y-=2*av.charHeight;\r
+\r
+       int seq = av.getIndex(y);\r
+       String id = av.getAlignment().getSequenceAt(seq).getName();\r
+\r
+       try{\r
+         jalview.util.BrowserLauncher.openURL(\r
+             "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[swall-id:" + id +\r
+             "]+-vn+2");\r
+       }catch(Exception ex){ex.printStackTrace();}\r
+    }\r
+\r
+  }\r
   public void mouseEntered(MouseEvent e) { }\r
   public void mouseExited (MouseEvent e) { }\r
 \r
   public void mousePressed(MouseEvent e) {\r
-    int x = e.getX();\r
+    if (e.getClickCount() == 2)\r
+      return;\r
+\r
     int y = e.getY();\r
+    if(av.getWrapAlignment())\r
+      y-=2*av.charHeight;\r
 \r
     int seq = av.getIndex(y);\r
 \r
-    mouseDown = true;\r
-\r
-      if( javax.swing.SwingUtilities.isRightMouseButton(e))\r
-      {\r
-        String id = av.getAlignment().getSequenceAt(seq).getName();\r
-        String s = (String)JOptionPane.showInputDialog(\r
-                    this,\r
-                    "Edit sequence name",\r
-                    "Edit sequence name",\r
-                    JOptionPane.PLAIN_MESSAGE,\r
-                    null,\r
-                    null,\r
-                    id);\r
-\r
-        if(s!=null)\r
-        {\r
-          av.getAlignment().getSequenceAt(seq).setName(s);\r
-          alignPanel.RefreshPanels();\r
-        }\r
-\r
-      }\r
-      else\r
-      {\r
-        if (seq != -1)\r
-          selectSeqs(seq,seq);\r
-\r
-        lastid = seq;\r
-      }\r
+    if (javax.swing.SwingUtilities.isRightMouseButton(e))\r
+    {\r
+      jalview.gui.PopupMenu pop = new jalview.gui.PopupMenu(alignPanel,\r
+          av.getAlignment().getSequenceAt(seq));\r
+      pop.show(this, e.getX(), y);\r
+      return;\r
+    }\r
+\r
+\r
+\r
+    if(av.getRubberbandGroup()!=null && (av.getRubberbandGroup().getSize() == av.getSelection().size()))\r
+          selectedSequenceGroup = av.getRubberbandGroup();\r
+\r
+    if (selectedSequenceGroup == null)\r
+    {\r
+      selectedSequenceGroup = new SequenceGroup();\r
+      av.setRubberbandGroup(selectedSequenceGroup);\r
+    }\r
+\r
+    selectedSequenceGroup.setStartRes(0);\r
+    selectedSequenceGroup.setEndRes(av.getAlignment().getWidth() - 1);\r
+\r
+    if (seq != -1)\r
+      selectSeqs(seq, seq);\r
+\r
+    lastid = seq;\r
+\r
+\r
     return;\r
   }\r
 \r
-  public void mouseReleased(MouseEvent e) {\r
+  public void mouseReleased(MouseEvent e)\r
+  {\r
     lastid = -1;\r
-\r
-    mouseDown = false;\r
-    mouseUp   = true;\r
-\r
     PaintRefresher.Refresh(this);\r
-\r
+    selectedSequenceGroup = null;\r
   }\r
 }\r