add(idCanvas, BorderLayout.CENTER);\r
addMouseListener(this);\r
addMouseMotionListener(this);\r
+ ToolTipManager.sharedInstance().registerComponent(this);\r
}\r
\r
/**\r
*/\r
public void mouseMoved(MouseEvent e)\r
{\r
- }\r
+ int seq = Math.max(0, alignPanel.seqPanel.findSeq(e));\r
+ if(seq>-1 && seq<av.alignment.getHeight())\r
+ {\r
+ SequenceI sequence = av.alignment.getSequenceAt(seq);\r
+ StringBuffer tip = new StringBuffer("<html>");\r
+ tip.append(sequence.getDisplayId(true));\r
+ if (av.alignment.getSequenceAt(seq).getDescription() != null)\r
+ {\r
+ tip.append("<table width=250 border=0><tr><td><i>");\r
+ tip.append(av.alignment.getSequenceAt(seq).getDescription());\r
+\r
+ //ADD NON POSITIONAL SEQUENCE INFO\r
+ SequenceFeature [] features = sequence.getDatasetSequence().getSequenceFeatures();\r
+ if(features!=null)\r
+ {\r
+ for(int i=0; i<features.length; i++)\r
+ {\r
+ if(features[i].begin == 0 && features[i].end ==0)\r
+ {\r
+ tip.append("<br>"+features[i].featureGroup\r
+ +" "+ features[i].getType()+" "+features[i].description);\r
+ }\r
+ }\r
+ }\r
+ tip.append("</i></td></tr></table>");\r
+ }\r
\r
- int getWrappedY(int y)\r
- {\r
- int hgap = av.charHeight;\r
- if (av.scaleAboveWrapped)\r
- hgap += av.charHeight;\r
+ DBRefEntry[] dbrefs = sequence.getDatasetSequence().getDBRef();\r
+ if (dbrefs != null)\r
+ {\r
+ tip.append("<i>");\r
+ for (int i = 0; i < dbrefs.length; i++)\r
+ {\r
+ tip.append("<br>");\r
+ tip.append(dbrefs[i].getSource() + " "\r
+ + dbrefs[i].getAccessionId());\r
+ }\r
+ tip.append("</i>");\r
+ }\r
\r
- return y - hgap;\r
+ tip.append("</html>");\r
+ setToolTipText(tip.toString());\r
+ }\r
}\r
\r
\r
{\r
mouseDragging = true;\r
\r
- int y = e.getY();\r
-\r
- if (av.getWrapAlignment())\r
- {\r
- y = getWrappedY(y);\r
- }\r
-\r
- int seq = av.getIndex(y);\r
-\r
- if (seq < 0)\r
- {\r
- return;\r
- }\r
+ int seq = Math.max(0, alignPanel.seqPanel.findSeq(e));\r
\r
if (seq < lastid)\r
{\r
*/\r
public void mouseClicked(MouseEvent e)\r
{\r
- if (e.getClickCount() < 2)\r
+ if (e.getClickCount() < 2)\r
return;\r
\r
java.util.Vector links = Preferences.sequenceURLLinks;\r
if (links == null || links.size() < 1)\r
return;\r
\r
- int y = e.getY();\r
-\r
- if (av.getWrapAlignment())\r
- {\r
- y = getWrappedY(y);\r
- }\r
+ int seq = alignPanel.seqPanel.findSeq(e);\r
\r
//DEFAULT LINK IS FIRST IN THE LINK LIST\r
- int seq = av.getIndex(y);\r
+\r
String id = av.getAlignment().getSequenceAt(seq).getName();\r
+ if (id.indexOf("|") > -1)\r
+ id = id.substring(id.lastIndexOf("|") + 1);\r
+\r
\r
String url = links.elementAt(0).toString();\r
url = url.substring(url.indexOf("|")+1);\r
return;\r
}\r
\r
- int y = e.getY();\r
-\r
- if (av.getWrapAlignment())\r
- {\r
- y = getWrappedY(y);\r
- }\r
-\r
- int seq = av.getIndex(y);\r
+ int seq = alignPanel.seqPanel.findSeq(e);\r
\r
- if (seq == -1)\r
- {\r
- return;\r
- }\r
\r
if (javax.swing.SwingUtilities.isRightMouseButton(e))\r
{\r
jalview.gui.PopupMenu pop = new jalview.gui.PopupMenu(alignPanel,\r
- (Sequence) av.getAlignment().getSequenceAt(seq));\r
- pop.show(this, e.getX(), y);\r
+ (Sequence) av.getAlignment().getSequenceAt(seq),\r
+ Preferences.sequenceURLLinks);\r
+ pop.show(this, e.getX(), e.getY());\r
\r
return;\r
}\r
\r
- if (!e.isControlDown() && !e.isShiftDown() &&\r
- (av.alignment.findGroup(av.alignment.getSequenceAt(seq)) != null))\r
- {\r
- SequenceGroup selection = new SequenceGroup();\r
- SequenceGroup sg = av.alignment.findGroup(av.alignment.getSequenceAt(\r
- seq));\r
- selection.setStartRes(0);\r
- selection.setEndRes(av.alignment.getWidth() - 1);\r
-\r
- for (int i = 0; i < sg.getSize(); i++)\r
- {\r
- selection.addSequence(sg.getSequenceAt(i), true);\r
- }\r
-\r
- av.setSelectionGroup(selection);\r
\r
- return;\r
- }\r
\r
if ((av.getSelectionGroup() == null) ||\r
- (!e.isControlDown() && (av.getSelectionGroup() != null)))\r
+ ((!e.isControlDown() && !e.isShiftDown()) && av.getSelectionGroup() != null))\r
{\r
- av.setSelectionGroup(new SequenceGroup());\r
+ av.setSelectionGroup(new SequenceGroup());\r
+ av.getSelectionGroup().setStartRes(0);\r
+ av.getSelectionGroup().setEndRes(av.alignment.getWidth() - 1);\r
}\r
\r
- av.getSelectionGroup().setStartRes(0);\r
- av.getSelectionGroup().setEndRes(av.alignment.getWidth() - 1);\r
\r
if (e.isShiftDown() && (lastid != -1))\r
{\r
*/\r
void selectSeqs(int start, int end)\r
{\r
+ if(av.getSelectionGroup()==null)\r
+ return;\r
+\r
lastid = start;\r
\r
if (end < start)\r
\r
for (int i = start; i <= end; i++)\r
{\r
- av.getSelectionGroup().addSequence(av.getAlignment().getSequenceAt(i),\r
+ av.getSelectionGroup().addSequence(av.getAlignment().getSequenceAt(i),\r
true);\r
}\r
}\r
git://source.jalview.org / jalview.git / blobdiff