JAL-2385 more tests/bug fixes mostly for gui.SliderPanel and some

[jalview.git] / src / jalview / gui / IdPanel.java

diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java
index 2aa7bf5..59d12d9 100755 (executable)
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -109,8 +109,8 @@ public class IdPanel extends JPanel implements MouseListener,
     if (seq > -1 && seq < av.getAlignment().getHeight())
     {
       SequenceI sequence = av.getAlignment().getSequenceAt(seq);
-      StringBuffer tip = new StringBuffer(64);
-      seqAnnotReport.createSequenceAnnotationReport(tip, sequence,
+      StringBuilder tip = new StringBuilder(64);
+      seqAnnotReport.createTooltipAnnotationReport(tip, sequence,
               av.isShowDBRefs(), av.isShowNPFeats(),
               sp.seqCanvas.fr.getMinMax());
       setToolTipText(JvSwingUtils.wrapTooltip(true,
@@ -225,7 +225,14 @@ public class IdPanel extends JPanel implements MouseListener,
         url = null;
         continue;
       }
-      ;
+
+      if (urlLink.usesDBAccession())
+      {
+        // this URL requires an accession id, not the name of a sequence
+        url = null;
+        continue;
+      }
+
       if (!urlLink.isValid())
       {
         jalview.bin.Cache.log.error(urlLink.getInvalidMessage());
@@ -247,10 +254,10 @@ public class IdPanel extends JPanel implements MouseListener,
       jalview.util.BrowserLauncher.openURL(url);
     } catch (Exception ex)
     {
-      JOptionPane.showInternalMessageDialog(Desktop.desktop,
+      JvOptionPane.showInternalMessageDialog(Desktop.desktop,
               MessageManager.getString("label.web_browser_not_found_unix"),
               MessageManager.getString("label.web_browser_not_found"),
-              JOptionPane.WARNING_MESSAGE);
+              JvOptionPane.WARNING_MESSAGE);
       ex.printStackTrace();
     }
   }
@@ -320,12 +327,13 @@ public class IdPanel extends JPanel implements MouseListener,
     if (e.isPopupTrigger()) // Mac reports this in mousePressed
     {
       showPopupMenu(e);
-
       return;
     }
+
     /*
-     * defer right-mouse click handling to mouse up on Mac
+     * defer right-mouse click handling to mouseReleased on Windows
      * (where isPopupTrigger() will answer true)
+     * NB isRightMouseButton is also true for Cmd-click on Mac
      */
     if (SwingUtilities.isRightMouseButton(e) && !Platform.isAMac())
     {
@@ -333,8 +341,8 @@ public class IdPanel extends JPanel implements MouseListener,
     }
 
     if ((av.getSelectionGroup() == null)
-            || (!jalview.util.Platform.isControlDown(e)
-                    && !e.isShiftDown() && av.getSelectionGroup() != null))
+            || (!jalview.util.Platform.isControlDown(e) && !e.isShiftDown() && av
+                    .getSelectionGroup() != null))
     {
       av.setSelectionGroup(new SequenceGroup());
       av.getSelectionGroup().setStartRes(0);
@@ -350,7 +358,7 @@ public class IdPanel extends JPanel implements MouseListener,
     {
       selectSeq(seq);
     }
-    // TODO is this addition ok here?
+
     av.isSelectionGroupChanged(true);
 
     alignPanel.paintAlignment(true);
@@ -367,8 +375,7 @@ public class IdPanel extends JPanel implements MouseListener,
     Sequence sq = (Sequence) av.getAlignment().getSequenceAt(seq2);
     // build a new links menu based on the current links + any non-positional
     // features
-    Vector<String> nlinks = new Vector<String>(
-            Preferences.sequenceURLLinks);
+    Vector<String> nlinks = new Vector<String>(Preferences.sequenceURLLinks);
     SequenceFeature sfs[] = sq == null ? null : sq.getSequenceFeatures();
     if (sfs != null)
     {