JAL-3093 'read-only' annotations when in wrapped mode

[jalview.git] / src / jalview / gui / IdPanel.java

diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java
index a183144..94eab76 100755 (executable)
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -20,10 +20,12 @@
  */
 package jalview.gui;
 
+import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
+import jalview.gui.SeqPanel.MousePos;
 import jalview.io.SequenceAnnotationReport;
 import jalview.util.MessageManager;
 import jalview.util.Platform;
@@ -102,15 +104,28 @@ public class IdPanel extends JPanel
   public void mouseMoved(MouseEvent e)
   {
     SeqPanel sp = alignPanel.getSeqPanel();
-    int seq = Math.max(0, sp.findSeq(e));
-    if (seq > -1 && seq < av.getAlignment().getHeight())
+    MousePos pos = sp.findMousePosition(e);
+    if (pos.annotationIndex != -1)
     {
-      SequenceI sequence = av.getAlignment().getSequenceAt(seq);
-      StringBuilder tip = new StringBuilder(64);
-      seqAnnotReport.createTooltipAnnotationReport(tip, sequence,
-              av.isShowDBRefs(), av.isShowNPFeats(), sp.seqCanvas.fr);
-      setToolTipText(JvSwingUtils.wrapTooltip(true,
-              sequence.getDisplayId(true) + " " + tip.toString()));
+      /*
+       * mouse is over an annotation label in wrapped mode
+       */
+      AlignmentAnnotation annotation = av.getAlignment()
+              .getAlignmentAnnotation()[pos.annotationIndex];
+      setToolTipText(AnnotationLabels.getTooltip(annotation));
+    }
+    else
+    {
+      int seq = Math.max(0, pos.seqIndex);
+      if (seq < av.getAlignment().getHeight())
+      {
+        SequenceI sequence = av.getAlignment().getSequenceAt(seq);
+        StringBuilder tip = new StringBuilder(64);
+        seqAnnotReport.createTooltipAnnotationReport(tip, sequence,
+                av.isShowDBRefs(), av.isShowNPFeats(), sp.seqCanvas.fr);
+        setToolTipText(JvSwingUtils.wrapTooltip(true,
+                sequence.getDisplayId(true) + " " + tip.toString()));
+      }
     }
   }
 
@@ -125,7 +140,14 @@ public class IdPanel extends JPanel
   {
     mouseDragging = true;
 
-    int seq = Math.max(0, alignPanel.getSeqPanel().findSeq(e));
+    MousePos pos = alignPanel.getSeqPanel().findMousePosition(e);
+    if (pos.annotationIndex != -1)
+    {
+      // mouse is over annotation label in wrapped mode
+      return;
+    }
+
+    int seq = Math.max(0, pos.seqIndex);
 
     if (seq < lastid)
     {
@@ -196,7 +218,14 @@ public class IdPanel extends JPanel
       return;
     }
 
-    int seq = alignPanel.getSeqPanel().findSeq(e);
+    MousePos pos = alignPanel.getSeqPanel().findMousePosition(e);
+    if (pos.annotationIndex != -1)
+    {
+      // mouse is over annotation label in wrapped mode
+      return;
+    }
+
+    int seq = pos.seqIndex;
     String id = av.getAlignment().getSequenceAt(seq).getName();
     String url = Preferences.sequenceUrlLinks.getPrimaryUrl(id);
 
@@ -276,9 +305,16 @@ public class IdPanel extends JPanel
       return;
     }
 
+    MousePos pos = alignPanel.getSeqPanel().findMousePosition(e);
+    if (pos.annotationIndex != -1)
+    {
+      // mouse is over an annotation label in wrapped mode
+      return;
+    }
+    
     if (e.isPopupTrigger()) // Mac reports this in mousePressed
     {
-      showPopupMenu(e);
+      showPopupMenu(e, pos);
       return;
     }
 
@@ -301,14 +337,13 @@ public class IdPanel extends JPanel
       av.getSelectionGroup().setEndRes(av.getAlignment().getWidth() - 1);
     }
 
-    int seq = alignPanel.getSeqPanel().findSeq(e);
     if (e.isShiftDown() && (lastid != -1))
     {
-      selectSeqs(lastid, seq);
+      selectSeqs(lastid, pos.seqIndex);
     }
     else
     {
-      selectSeq(seq);
+      selectSeq(pos.seqIndex);
     }
 
     av.isSelectionGroupChanged(true);
@@ -321,10 +356,9 @@ public class IdPanel extends JPanel
    * 
    * @param e
    */
-  void showPopupMenu(MouseEvent e)
+  void showPopupMenu(MouseEvent e, MousePos pos)
   {
-    int seq2 = alignPanel.getSeqPanel().findSeq(e);
-    Sequence sq = (Sequence) av.getAlignment().getSequenceAt(seq2);
+    Sequence sq = (Sequence) av.getAlignment().getSequenceAt(pos.seqIndex);
 
     /*
      *  build a new links menu based on the current links
@@ -336,10 +370,7 @@ public class IdPanel extends JPanel
     {
       if (sf.links != null)
       {
-        for (String link : sf.links)
-        {
-          nlinks.add(link);
-        }
+        nlinks.addAll(sf.links);
       }
     }
 
@@ -410,6 +441,12 @@ public class IdPanel extends JPanel
     {
       scrollThread.running = false;
     }
+    MousePos pos = alignPanel.getSeqPanel().findMousePosition(e);
+    if (pos.annotationIndex != -1)
+    {
+      // mouse is over an annotation label in wrapped mode
+      return;
+    }
 
     mouseDragging = false;
     PaintRefresher.Refresh(this, av.getSequenceSetId());
@@ -418,7 +455,7 @@ public class IdPanel extends JPanel
 
     if (e.isPopupTrigger()) // Windows reports this in mouseReleased
     {
-      showPopupMenu(e);
+      showPopupMenu(e, pos);
     }
   }