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Can specify PDB chain to map sequence to - only used by applet so far
[jalview.git] / src / jalview / gui / Jalview2XML.java
diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 49b022c..198db44 100755 (executable)
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -1915,7 +1915,7 @@ public class Jalview2XML
               else if(comp!=null)
               {
                 StructureSelectionManager.getStructureSelectionManager()
-                    .setMapping(seq, pdbFile,
+                    .setMapping(seq, null, pdbFile,
                                 jalview.io.AppletFormatAdapter.FILE);
 
                 ( (AppJMol) comp).addSequence(seq);