import jalview.schemabinding.version2.*;
import jalview.schemes.*;
import jalview.structure.StructureSelectionManager;
+import jalview.util.Platform;
import jalview.util.jarInputStreamProvider;
/**
}
;
out.close();
- String t=outFile.toURI().getPath().substring(1);
+ String t=outFile.getAbsolutePath();
alreadyLoadedPDB.put(pdbId, t);
return t;
}
{
newFileLoc = new StringBuffer();
}
+ do {
+ // look for next filename in load statement
newFileLoc.append(state.substring(cp,
ncp = (state.indexOf("\"", ncp + 1) + 1)));
String oldfilenam = state.substring(ncp,
// have to normalize filename - since Jmol and jalview do filename
// translation differently.
Object[] filedat = oldFiles.get(new File(oldfilenam));
- newFileLoc.append(((String) filedat[0]));
+ newFileLoc.append(Platform.escapeString((String) filedat[0]));
pdbfilenames.addElement((String) filedat[0]);
pdbids.addElement((String) filedat[1]);
seqmaps.addElement((SequenceI[]) ((Vector<SequenceI>) filedat[2])
newFileLoc.append("\"");
cp = ecp + 1; // advance beyond last \" and set cursor so we can
// look for next file statement.
+ } while ((ncp=state.indexOf("/*file*/",cp))>-1);
}
if (cp > 0)
{