object.setVamsasModel(new VamsasModel());\r
\r
object.setCreationDate(new java.util.Date(timeStamp));\r
+ object.setVersion(jalview.bin.Cache.VERSION);\r
\r
jalview.datamodel.AlignmentI jal = af.viewport.alignment;\r
\r
}\r
else\r
{\r
+ af.annotationPanelMenuItem.setState(view.getShowAnnotation());\r
af.viewport.setShowAnnotation(view.getShowAnnotation());\r
af.alignPanel.setAnnotationVisible(view.getShowAnnotation());\r
}\r
\r
//LOAD TREES\r
///////////////////////////////////////\r
- /* JInternalFrame[] frames = Desktop.desktop.getAllFrames();\r
-for(int t=0; t<frames.length; t++)\r
-{\r
- if (frames[t] instanceof TreePanel)\r
- {\r
- TreePanel tp = (TreePanel) frames[t];\r
- if(tp.treeCanvas.av.alignment==jal)\r
- {\r
- Tree tree = new Tree();\r
- tree.setTitle(tp.getTitle());\r
- tree.setCurrentTree((af.viewport.currentTree == tp.getTree()));\r
- tree.setNewick(tp.getTree().toString());\r
- tree.setThreshold(tp.treeCanvas.threshold);\r
-\r
- tree.setHeight(tp.getHeight());\r
- tree.setWidth(tp.getWidth());\r
- tree.setXpos(tp.getX());\r
- tree.setYpos(tp.getY());\r
-\r
- jms.addTree(tree);\r
- }\r
-*/\r
if (jms.getTreeCount() > 0)\r
{\r
try\r