hideSequence hide all before recalc consensus

[jalview.git] / src / jalview / gui / Jalview2XML.java

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index be03a9c..d6061a4 100755 (executable)
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -1203,11 +1203,14 @@ public class Jalview2XML
             }
           }
 
+          jalview.datamodel.SequenceI [] hseqs = new
+              jalview.datamodel.SequenceI[hiddenSeqs.size()];
+
           for(int s=0; s<hiddenSeqs.size(); s++)
-          {
-              af.viewport.hideSequence(
-                (jalview.datamodel.SequenceI)hiddenSeqs.elementAt(s));
-          }
+            hseqs[s] = (jalview.datamodel.SequenceI)hiddenSeqs.elementAt(s);
+
+          af.viewport.hideSequence( hseqs );
+
         }