Turn off validation for speed

[jalview.git] / src / jalview / gui / Jalview2XML.java

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 5a4b03a..eb071e2 100755 (executable)
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -633,6 +633,7 @@ public class Jalview2XML
                     JalviewModel object = new JalviewModel();\r
 \r
                     Unmarshaller unmar = new Unmarshaller(object);\r
+                    unmar.setValidation(false);\r
                     object = (JalviewModel) unmar.unmarshal( in );\r
 \r
                     af = LoadFromObject(object);\r
@@ -752,7 +753,7 @@ public class Jalview2XML
                 {\r
                     anot[ae[aa].getPosition()] = new jalview.datamodel.Annotation(ae[aa].getDisplayCharacter(),\r
                             ae[aa].getDescription(),\r
-                            ae[aa].getSecondaryStructure().charAt(0),\r
+                            ae[aa].getSecondaryStructure().length()==0?' ':ae[aa].getSecondaryStructure().charAt(0),\r
                             ae[aa].getValue());\r
                 }\r
 \r