if (groups[i].getConsThreshold() != 0)\r
{\r
jalview.analysis.Conservation c = new jalview.analysis.Conservation("All",\r
- ResidueProperties.propHash, 3, sg.sequences, 0,\r
+ ResidueProperties.propHash, 3, sg.getSequences(false), 0,\r
sg.getWidth() - 1);\r
c.calculate();\r
c.verdict(false, 25);\r