af.viewport.getResidueShading().setThreshold(view.getPidThreshold(),
true);
af.viewport.getResidueShading()
- .setConsensus(af.viewport.getSequenceConsensusHash());
+ .setConsensus(af.viewport.getConsensusProfiles());
af.viewport.setColourAppliesToAllGroups(false);
af.alignPanel.updateLayout();
af.changeColour(cs);