OptionPanes invokeLater

[jalview.git] / src / jalview / gui / Jalview2XML_V1.java

diff --git a/src/jalview/gui/Jalview2XML_V1.java b/src/jalview/gui/Jalview2XML_V1.java
index 1ccf7e6..d8dfe62 100755 (executable)
--- a/src/jalview/gui/Jalview2XML_V1.java
+++ b/src/jalview/gui/Jalview2XML_V1.java
@@ -113,10 +113,8 @@ public class Jalview2XML_V1
                 for (int i = 0; i < entryCount; i++)\r
                 {\r
                     jarentry = jin.getNextJarEntry();\r
-\r
                   }\r
 \r
-\r
                   class NoDescIDResolver implements IDResolver\r
                   {\r
                     public Object resolve(String idref)\r
@@ -359,16 +357,13 @@ public class Jalview2XML_V1
         af.viewport.setWrapAlignment(view.getWrapAlignment());\r
         af.wrapMenuItem.setSelected(view.getWrapAlignment());\r
 \r
-        if (view.getWrapAlignment())\r
-        {\r
-            af.alignPanel.setWrapAlignment(view.getWrapAlignment());\r
-        }\r
-        else\r
-        {\r
-            af.annotationPanelMenuItem.setState(view.getShowAnnotation());\r
-            af.viewport.setShowAnnotation(view.getShowAnnotation());\r
-            af.alignPanel.setAnnotationVisible(view.getShowAnnotation());\r
-        }\r
+\r
+        af.alignPanel.setWrapAlignment(view.getWrapAlignment());\r
+\r
+        af.annotationPanelMenuItem.setState(view.getShowAnnotation());\r
+        af.viewport.setShowAnnotation(view.getShowAnnotation());\r
+        af.alignPanel.setAnnotationVisible(view.getShowAnnotation());\r
+\r
 \r
         af.viewport.setShowBoxes(view.getShowBoxes());\r
         af.viewBoxesMenuItem.setSelected(view.getShowBoxes());\r