JAL-4034 Fix #2 show an icon and a button to press to initiate search

[jalview.git] / src / jalview / gui / JalviewChimeraBindingModel.java

diff --git a/src/jalview/gui/JalviewChimeraBindingModel.java b/src/jalview/gui/JalviewChimeraBindingModel.java
index 31f24df..689106a 100644 (file)
--- a/src/jalview/gui/JalviewChimeraBindingModel.java
+++ b/src/jalview/gui/JalviewChimeraBindingModel.java
@@ -20,6 +20,9 @@
  */
 package jalview.gui;
 
+import javax.swing.JComponent;
+import javax.swing.SwingUtilities;
+
 import jalview.api.AlignmentViewPanel;
 import jalview.api.structures.JalviewStructureDisplayI;
 import jalview.datamodel.PDBEntry;
@@ -28,9 +31,6 @@ import jalview.ext.rbvi.chimera.JalviewChimeraBinding;
 import jalview.io.DataSourceType;
 import jalview.structure.StructureSelectionManager;
 
-import javax.swing.JComponent;
-import javax.swing.SwingUtilities;
-
 public class JalviewChimeraBindingModel extends JalviewChimeraBinding
 {
   public JalviewChimeraBindingModel(ChimeraViewFrame chimeraViewFrame,
@@ -51,7 +51,7 @@ public class JalviewChimeraBindingModel extends JalviewChimeraBinding
   @Override
   public void refreshGUI()
   {
-    javax.swing.SwingUtilities.invokeLater(new Runnable()
+    SwingUtilities.invokeLater(new Runnable()
     {
       @Override
       public void run()
@@ -62,63 +62,4 @@ public class JalviewChimeraBindingModel extends JalviewChimeraBinding
       }
     });
   }
-
-  @Override
-  public void updateColours(Object source)
-  {
-    AlignmentViewPanel ap = (AlignmentViewPanel) source;
-    // ignore events from panels not used to colour this view
-    if (!getViewer().isUsedForColourBy(ap))
-    {
-      return;
-    }
-    if (!isLoadingFromArchive())
-    {
-      colourBySequence(ap);
-    }
-  }
-
-  @Override
-  public void releaseReferences(Object svl)
-  {
-  }
-
-  @Override
-  protected void releaseUIResources()
-  {
-  }
-
-  @Override
-  public void refreshPdbEntries()
-  {
-  }
-
-  /**
-   * Send an asynchronous command to Chimera, in a new thread, optionally with
-   * an 'in progress' message in a progress bar somewhere
-   */
-  @Override
-  protected void sendAsynchronousCommand(final String command,
-          final String progressMsg)
-  {
-    final long handle = progressMsg == null ? 0
-            : getViewer().startProgressBar(progressMsg);
-    SwingUtilities.invokeLater(new Runnable()
-    {
-      @Override
-      public void run()
-      {
-        try
-        {
-          sendChimeraCommand(command, false);
-        } finally
-        {
-          if (progressMsg != null)
-          {
-            getViewer().stopProgressBar(null, handle);
-          }
-        }
-      }
-    });
-  }
 }