+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.gui;
import jalview.api.AlignmentViewPanel;
}
@Override
- public FeatureRenderer getFeatureRenderer(
- AlignmentViewPanel alignment)
+ public FeatureRenderer getFeatureRenderer(AlignmentViewPanel alignment)
{
AlignmentPanel ap = (alignment == null) ? cvf.getAlignmentPanel()
: (AlignmentPanel) alignment;
public void refreshPdbEntries()
{
}
+
+ /**
+ * Send an asynchronous command to Chimera, in a new thread, optionally with
+ * an 'in progress' message in a progress bar somewhere
+ */
+ protected void sendAsynchronousCommand(final String command,
+ final String progressMsg)
+ {
+ Thread thread = new Thread(new Runnable()
+ {
+
+ @Override
+ public void run()
+ {
+ long stm = cvf.startProgressBar(progressMsg);
+ try
+ {
+ sendChimeraCommand(command, false);
+ } finally
+ {
+ cvf.stopProgressBar(null, stm);
+ }
+ }
+ });
+ thread.start();
+
+ }
}