package jalview.gui;
import jalview.api.AlignViewportI;
+import jalview.bin.Cache;
import jalview.renderer.OverviewRenderer;
+import jalview.renderer.OverviewResColourFinder;
import jalview.viewmodel.OverviewDimensions;
import java.awt.Color;
+import java.awt.Dimension;
import java.awt.Graphics;
import java.awt.image.BufferedImage;
private AlignViewportI av;
+ private OverviewResColourFinder cf;
+
private ProgressPanel progressPanel;
public OverviewCanvas(OverviewDimensions overviewDims,
sr = new SequenceRenderer(av);
sr.renderGaps = false;
- sr.forOverview = true;
fr = new jalview.renderer.seqfeatures.FeatureRenderer(av);
+ boolean useLegacy = Cache.getDefault(Preferences.USE_LEGACY_GAP, false);
+ Color gapCol = Cache.getDefaultColour(Preferences.GAP_COLOUR,
+ jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_GAP);
+ Color hiddenCol = Cache.getDefaultColour(Preferences.HIDDEN_COLOUR,
+ jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_HIDDEN);
+ cf = new OverviewResColourFinder(useLegacy, gapCol, hiddenCol);
+
setSize(od.getWidth(), od.getHeight());
}
fr.transferSettings(transferRenderer);
}
- or = new OverviewRenderer(sr, fr, od);
+ setPreferredSize(new Dimension(od.getWidth(), od.getHeight()));
+
+ or = new OverviewRenderer(fr, od, av.getAlignment(),
+ av.getResidueShading(), cf);
+
or.addPropertyChangeListener(progressPanel);
+
miniMe = or.draw(od.getRows(av.getAlignment()),
od.getColumns(av.getAlignment()));