-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
- *\r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
- *\r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
- * GNU General Public License for more details.\r
- *\r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
- */\r
-package jalview.gui;\r
-\r
-import java.awt.*;\r
-import java.awt.event.*;\r
-import java.awt.image.*;\r
-\r
-import javax.swing.*;\r
-\r
-\r
-/**\r
- * DOCUMENT ME!\r
- *\r
- * @author $author$\r
- * @version $Revision$\r
- */\r
-public class OverviewPanel extends JPanel implements Runnable\r
-{\r
- BufferedImage miniMe;\r
- AlignViewport av;\r
- AlignmentPanel ap;\r
- float scalew = 1f;\r
- float scaleh = 1f;\r
- int width;\r
- int sequencesHeight;\r
- int graphHeight = 20;\r
- int boxX = -1;\r
- int boxY = -1;\r
- int boxWidth = -1;\r
- int boxHeight = -1;\r
- boolean resizing = false;\r
-\r
- // Can set different properties in this seqCanvas than\r
- // main visible SeqCanvas\r
- SequenceRenderer sr;\r
- FeatureRenderer fr;\r
-\r
- /**\r
- * Creates a new OverviewPanel object.\r
- *\r
- * @param ap DOCUMENT ME!\r
- */\r
- public OverviewPanel(AlignmentPanel ap)\r
- {\r
- this.av = ap.av;\r
- this.ap = ap;\r
- setLayout(null);\r
-\r
- sr = new SequenceRenderer(av);\r
- sr.renderGaps = false;\r
- sr.forOverview = true;\r
- fr = new FeatureRenderer(av);\r
-\r
- // scale the initial size of overviewpanel to shape of alignment\r
- float initialScale = (float) av.alignment.getWidth() / (float) av.alignment.getHeight();\r
-\r
- if(av.conservation==null)\r
- graphHeight = 0;\r
-\r
-\r
- if (av.alignment.getWidth() > av.alignment.getHeight())\r
- {\r
- // wider\r
- width = 400;\r
- sequencesHeight = (int) (400f / initialScale);\r
- if(sequencesHeight<40)\r
- sequencesHeight = 40;\r
- }\r
- else\r
- {\r
- // taller\r
- width = (int) (400f * initialScale);\r
- sequencesHeight = 300;\r
-\r
- if (width < 120)\r
- {\r
- width = 120;\r
- }\r
- }\r
-\r
- addComponentListener(new ComponentAdapter()\r
- {\r
- public void componentResized(ComponentEvent evt)\r
- {\r
- if ((getWidth() != width) ||\r
- (getHeight() != (sequencesHeight + graphHeight)))\r
- {\r
- updateOverviewImage();\r
- }\r
- }\r
- });\r
-\r
- addMouseMotionListener(new MouseMotionAdapter()\r
- {\r
- public void mouseDragged(MouseEvent evt)\r
- {\r
- if (!av.wrapAlignment)\r
- {\r
- boxX = evt.getX();\r
- boxY = evt.getY();\r
- checkValid();\r
- }\r
- }\r
- });\r
-\r
- addMouseListener(new MouseAdapter()\r
- {\r
- public void mousePressed(MouseEvent evt)\r
- {\r
- if(!av.wrapAlignment)\r
- {\r
- boxX = evt.getX();\r
- boxY = evt.getY();\r
- checkValid();\r
- }\r
- }\r
- });\r
-\r
- updateOverviewImage();\r
- }\r
-\r
-\r
- /**\r
- * DOCUMENT ME!\r
- */\r
- void checkValid()\r
- {\r
- if (boxY < 0)\r
- {\r
- boxY = 0;\r
- }\r
-\r
- if (boxY > (sequencesHeight - boxHeight))\r
- {\r
- boxY = sequencesHeight - boxHeight + 1;\r
- }\r
-\r
- if (boxX < 0)\r
- {\r
- boxX = 0;\r
- }\r
-\r
- if (boxX > (width - boxWidth))\r
- {\r
- if(av.hasHiddenColumns)\r
- {\r
- //Try smallest possible box\r
- boxWidth = (int) ( (av.endRes - av.startRes + 1) *\r
- av.getCharWidth() * scalew);\r
- }\r
- boxX = width - boxWidth;\r
- }\r
-\r
- int col = (int) (boxX / scalew / av.getCharWidth());\r
- int row = (int) (boxY / scaleh / av.getCharHeight());\r
-\r
- if (av.hasHiddenColumns)\r
- {\r
- if (!av.getColumnSelection().isVisible(col))\r
- {\r
- return;\r
- }\r
-\r
- col = av.getColumnSelection().findColumnPosition(col);\r
- }\r
-\r
- if( av.hasHiddenRows )\r
- {\r
- row = av.alignment.getHiddenSequences().findIndexWithoutHiddenSeqs(row);\r
- }\r
-\r
- ap.setScrollValues( col, row );\r
-\r
- }\r
-\r
- /**\r
- * DOCUMENT ME!\r
- */\r
- public void updateOverviewImage()\r
- {\r
- if (resizing)\r
- {\r
- resizeAgain = true;\r
- return;\r
- }\r
-\r
- resizing = true;\r
-\r
- if ( (getWidth() > 0) && (getHeight() > 0))\r
- {\r
- width = getWidth();\r
- sequencesHeight = getHeight() - graphHeight;\r
- }\r
-\r
- setPreferredSize(new Dimension(width, sequencesHeight + graphHeight));\r
-\r
- Thread thread = new Thread(this);\r
- thread.start();\r
- repaint();\r
- }\r
-\r
- // This is set true if the user resizes whilst\r
- // the overview is being calculated\r
- boolean resizeAgain = false;\r
-\r
- /**\r
- * DOCUMENT ME!\r
- */\r
- public void run()\r
- {\r
- miniMe = null;\r
-\r
- if (av.showSequenceFeatures)\r
- {\r
- fr.transferSettings( ap.seqPanel.seqCanvas.getFeatureRenderer() );\r
- }\r
-\r
- int alwidth = av.alignment.getWidth();\r
- int alheight = av.alignment.getHeight()\r
- +av.alignment.getHiddenSequences().getSize();\r
-\r
- setPreferredSize(new Dimension(width, sequencesHeight + graphHeight));\r
-\r
- int fullsizeWidth = alwidth * av.getCharWidth();\r
- int fullsizeHeight = alheight * av.getCharHeight();\r
-\r
- scalew = (float) width / (float) fullsizeWidth;\r
- scaleh = (float) sequencesHeight / (float) fullsizeHeight;\r
-\r
- miniMe = new BufferedImage(width, sequencesHeight + graphHeight,\r
- BufferedImage.TYPE_INT_RGB);\r
-\r
-\r
- Graphics mg = miniMe.getGraphics();\r
- mg.setColor(Color.orange);\r
- mg.fillRect(0,0,width, miniMe.getHeight());\r
-\r
- float sampleCol = (float) alwidth / (float) width;\r
- float sampleRow = (float) alheight / (float) sequencesHeight;\r
-\r
- int lastcol=-1, lastrow=-1;\r
- int color = Color.white.getRGB();\r
- int row, col;\r
- jalview.datamodel.SequenceI seq;\r
- boolean hiddenRow = false;\r
- for (row = 0; row < sequencesHeight; row++)\r
- {\r
- if((int)(row*sampleRow)==lastrow)\r
- {\r
- //No need to recalculate the colours,\r
- //Just copy from the row above\r
- for (col = 0; col < width; col++)\r
- {\r
- miniMe.setRGB(col, row, miniMe.getRGB(col, row-1));\r
- }\r
- continue;\r
- }\r
-\r
- lastrow = (int)(row*sampleRow);\r
-\r
- hiddenRow = false;\r
- if (av.hasHiddenRows)\r
- {\r
- seq = av.alignment.getHiddenSequences().getHiddenSequence(lastrow);\r
- if (seq == null)\r
- {\r
-\r
- int index =\r
- av.alignment.getHiddenSequences().findIndexWithoutHiddenSeqs(lastrow);\r
-\r
-\r
- seq = av.alignment.getSequenceAt(index);\r
- }\r
- else\r
- {\r
- hiddenRow = true;\r
- }\r
- }\r
- else\r
- seq = av.alignment.getSequenceAt(lastrow);\r
-\r
- if(seq==null)\r
- {\r
- System.out.println(lastrow+" null");\r
- continue;\r
- }\r
-\r
- for (col = 0; col < width; col++)\r
- {\r
- if((int)(col*sampleCol) == lastcol && (int)(row*sampleRow)==lastrow)\r
- {\r
- miniMe.setRGB(col,row,color);\r
- continue;\r
- }\r
-\r
-\r
- lastcol = (int)(col*sampleCol);\r
-\r
- if (seq.getLength() > lastcol)\r
- {\r
- color = sr.getResidueBoxColour(\r
- seq, lastcol).getRGB();\r
-\r
- if (av.showSequenceFeatures)\r
- color = fr.findFeatureColour(color, lastrow, lastcol);\r
- }\r
- else\r
- {\r
- color = -1; //White\r
- }\r
-\r
- if(hiddenRow ||\r
- (av.hasHiddenColumns && !av.getColumnSelection().isVisible(lastcol)))\r
- {\r
- color = new Color(color).darker().darker().getRGB();\r
- }\r
-\r
-\r
- miniMe.setRGB(col,row,color);\r
-\r
-\r
- }\r
- }\r
-\r
- if (av.conservation != null)\r
- {\r
- for (col = 0; col < width; col++)\r
- {\r
- lastcol = (int) (col * sampleCol);\r
- {\r
- mg.translate(col, sequencesHeight);\r
- ap.annotationPanel.drawGraph(mg, av.conservation,\r
- (int) (sampleCol) + 1,\r
- graphHeight,\r
- (int) (col * sampleCol),\r
- (int) (col * sampleCol) + 1);\r
- mg.translate( -col, -sequencesHeight);\r
- }\r
- }\r
- }\r
- System.gc();\r
-\r
- resizing = false;\r
-\r
- setBoxPosition();\r
-\r
- if(resizeAgain)\r
- {\r
- resizeAgain = false;\r
- updateOverviewImage();\r
- }\r
- }\r
-\r
- /**\r
- * DOCUMENT ME!\r
- */\r
- public void setBoxPosition()\r
- {\r
- int fullsizeWidth = av.alignment.getWidth() * av.getCharWidth();\r
- int fullsizeHeight = (av.alignment.getHeight()\r
- +av.alignment.getHiddenSequences().getSize()) * av.getCharHeight();\r
-\r
- int startRes = av.getStartRes();\r
- int endRes = av.getEndRes();\r
-\r
- if(av.hasHiddenColumns)\r
- {\r
- startRes = av.getColumnSelection().adjustForHiddenColumns(startRes);\r
- endRes = av.getColumnSelection().adjustForHiddenColumns(endRes);\r
- }\r
-\r
- int startSeq = av.startSeq;\r
- int endSeq = av.endSeq;\r
-\r
- if (av.hasHiddenRows)\r
- {\r
- startSeq =\r
- av.alignment.getHiddenSequences().adjustForHiddenSeqs(startSeq);\r
-\r
- endSeq =\r
- av.alignment.getHiddenSequences().adjustForHiddenSeqs(endSeq);\r
-\r
- }\r
-\r
-\r
- scalew = (float) width / (float) fullsizeWidth;\r
- scaleh = (float) sequencesHeight / (float) fullsizeHeight;\r
-\r
- boxX = (int) (startRes * av.getCharWidth() * scalew);\r
- boxY = (int) (startSeq * av.getCharHeight() * scaleh);\r
-\r
-\r
-\r
- if(av.hasHiddenColumns)\r
- boxWidth = (int) ((endRes - startRes + 1) * av.getCharWidth() * scalew);\r
- else\r
- boxWidth = (int) ((endRes - startRes + 1) * av.getCharWidth() * scalew);\r
-\r
-\r
- boxHeight = (int) ((endSeq - startSeq) * av.getCharHeight() * scaleh);\r
-\r
-\r
- repaint();\r
- }\r
-\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param g DOCUMENT ME!\r
- */\r
- public void paintComponent(Graphics g)\r
- {\r
- if (miniMe != null && !resizing)\r
- {\r
- g.drawImage(miniMe, 0, 0, this);\r
- }\r
- else\r
- {\r
- g.setColor(Color.white);\r
- g.fillRect(0, 0, getWidth(), getHeight());\r
- g.setColor(Color.black);\r
- g.setFont(new Font("Verdana", Font.BOLD, 15));\r
- g.drawString("Recalculating", 5, sequencesHeight / 2);\r
- g.drawString("Overview.....", 5, (sequencesHeight / 2) + 20);\r
- }\r
-\r
-\r
- g.setColor(Color.red);\r
- g.drawRect(boxX, boxY, boxWidth, boxHeight);\r
- g.drawRect(boxX + 1, boxY + 1, boxWidth - 2, boxHeight - 2);\r
-\r
- }\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.gui;
+
+import jalview.api.AlignViewportI;
+import jalview.bin.Cache;
+import jalview.renderer.OverviewRenderer;
+import jalview.util.MessageManager;
+import jalview.util.Platform;
+import jalview.viewmodel.OverviewDimensions;
+import jalview.viewmodel.OverviewDimensionsHideHidden;
+import jalview.viewmodel.OverviewDimensionsShowHidden;
+import jalview.viewmodel.ViewportListenerI;
+
+import java.awt.BorderLayout;
+import java.awt.Cursor;
+import java.awt.Dimension;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.ComponentAdapter;
+import java.awt.event.ComponentEvent;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
+import java.awt.event.MouseMotionAdapter;
+import java.beans.PropertyChangeEvent;
+import java.beans.PropertyVetoException;
+
+import javax.swing.JCheckBoxMenuItem;
+import javax.swing.JInternalFrame;
+import javax.swing.JPanel;
+import javax.swing.JPopupMenu;
+import javax.swing.SwingUtilities;
+
+/**
+ * Panel displaying an overview of the full alignment, with an interactive box
+ * representing the viewport onto the alignment.
+ *
+ * @author $author$
+ * @version $Revision$
+ */
+@SuppressWarnings("serial")
+public class OverviewPanel extends JPanel
+ implements Runnable, ViewportListenerI
+{
+ protected OverviewDimensions od;
+
+ private OverviewCanvas oviewCanvas;
+
+ private AlignViewportI av;
+
+ private AlignmentPanel ap;
+
+ protected JCheckBoxMenuItem displayToggle;
+
+ protected boolean showHidden = true;
+
+ protected boolean draggingBox = false;
+
+ private Dimension dim;
+
+ private boolean showProgress = !Platform.isJS();
+
+ protected ProgressPanel progressPanel;
+
+
+ /**
+ * Creates the appropriate type of OverviewDimensions, with the desired size
+ */
+ private void createOverviewDimensions()
+ {
+ boolean showAnnotation = (av.isShowAnnotation()
+ && av.getAlignmentConservationAnnotation() != null);
+ if (showHidden)
+ {
+ od = new OverviewDimensionsShowHidden(av.getRanges(), showAnnotation,
+ dim);
+ }
+ else
+ {
+ od = new OverviewDimensionsHideHidden(av.getRanges(), showAnnotation,
+ dim);
+ }
+ }
+
+ public OverviewPanel(AlignmentPanel alPanel, Dimension dim)
+ {
+ this.av = alPanel.av;
+ this.ap = alPanel;
+ this.dim = dim;
+
+ showHidden = Cache.getDefault(Preferences.SHOW_OV_HIDDEN_AT_START,
+ false);
+ createOverviewDimensions();
+ setLayout(new BorderLayout());
+ progressPanel = new ProgressPanel(OverviewRenderer.UPDATE,
+ MessageManager.getString("label.oview_calc"), getWidth());
+ this.add(progressPanel, BorderLayout.SOUTH);
+ oviewCanvas = new OverviewCanvas(od, av, progressPanel);
+
+ add(oviewCanvas, BorderLayout.CENTER);
+
+ av.getRanges().addPropertyChangeListener(this);
+
+ // without this the overview window does not size to fit the overview canvas
+ setPreferredSize(new Dimension(od.getWidth(), od.getHeight()));
+
+ addComponentListener(new ComponentAdapter()
+ {
+ @Override
+ public void componentResized(ComponentEvent evt)
+ {
+ // Resize is called on the initial display of the overview.
+ // This code adjusts sizes to account for the progress bar if it has not
+ // already been accounted for, which triggers another resize call for
+ // the correct sizing, at which point the overview image is updated.
+ // (This avoids a double recalculation of the image.)
+ if (getWidth() == od.getWidth() && getHeight() == od.getHeight()
+ + progressPanel.getHeight())
+ {
+ updateOverviewImage();
+ }
+ else
+ {
+ if ((getWidth() > 0) && (getHeight() > 0))
+ {
+ od.setWidth(getWidth());
+ od.setHeight(getHeight() - progressPanel.getHeight());
+ }
+
+ setPreferredSize(new Dimension(od.getWidth(),
+ od.getHeight() + progressPanel.getHeight()));
+ }
+ }
+
+ });
+
+ addMouseMotionListener(new MouseMotionAdapter()
+ {
+ @Override
+ public void mouseDragged(MouseEvent evt)
+ {
+ if (!SwingUtilities.isRightMouseButton(evt))
+ {
+ if (draggingBox)
+ {
+ // set the mouse position as a fixed point in the box
+ // and drag relative to that position
+ od.adjustViewportFromMouse(evt.getX(), evt.getY(),
+ av.getAlignment().getHiddenSequences(),
+ av.getAlignment().getHiddenColumns());
+ }
+ else
+ {
+ od.updateViewportFromMouse(evt.getX(), evt.getY(),
+ av.getAlignment().getHiddenSequences(),
+ av.getAlignment().getHiddenColumns());
+ }
+ }
+ }
+
+ @Override
+ public void mouseMoved(MouseEvent evt)
+ {
+ if (od.isPositionInBox(evt.getX(), evt.getY()))
+ {
+ /*
+ * using HAND_CURSOR rather than DRAG_CURSOR
+ * as the latter is not supported on Mac
+ */
+ getParent().setCursor(
+ Cursor.getPredefinedCursor(Cursor.HAND_CURSOR));
+ }
+ else
+ {
+ // reset cursor
+ getParent().setCursor(
+ Cursor.getPredefinedCursor(Cursor.CROSSHAIR_CURSOR));
+ }
+ }
+
+ });
+
+ addMouseListener(new MouseAdapter()
+ {
+ @Override
+ public void mousePressed(MouseEvent evt)
+ {
+
+ if (Platform.isWinRightButton(evt)) {
+ showPopupMenu(evt);
+ return;
+ }
+ if (SwingUtilities.isRightMouseButton(evt)) {
+ return;
+ }
+ // don't do anything if the mouse press is in the overview's box
+ // (wait to see if it's a drag instead)
+ // otherwise update the viewport
+ if (!od.isPositionInBox(evt.getX(), evt.getY()))
+ {
+ draggingBox = false;
+
+ // display drag cursor at mouse position
+ setCursor(Cursor.getPredefinedCursor(Cursor.MOVE_CURSOR));
+
+ od.updateViewportFromMouse(evt.getX(), evt.getY(),
+ av.getAlignment().getHiddenSequences(),
+ av.getAlignment().getHiddenColumns());
+ getParent().setCursor(
+ Cursor.getPredefinedCursor(Cursor.HAND_CURSOR));
+ }
+ else
+ {
+ draggingBox = true;
+ od.setDragPoint(evt.getX(), evt.getY(),
+ av.getAlignment().getHiddenSequences(),
+ av.getAlignment().getHiddenColumns());
+ }
+ }
+
+ @Override
+ public void mouseClicked(MouseEvent evt)
+ {
+ if (SwingUtilities.isRightMouseButton(evt))
+ {
+ showPopupMenu(evt);
+ }
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent evt)
+ {
+ draggingBox = false;
+ }
+
+ });
+
+ /*
+ * Javascript does not call componentResized on initial display,
+ * so do the update here
+ */
+ if (Platform.isJS())
+ {
+ updateOverviewImage();
+ }
+ }
+
+ /*
+ * Displays the popup menu and acts on user input
+ */
+ protected void showPopupMenu(MouseEvent e)
+ {
+ JPopupMenu popup = new JPopupMenu();
+ ActionListener menuListener = new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent event)
+ {
+ // switch on/off the hidden columns view
+ toggleHiddenColumns();
+ displayToggle.setSelected(showHidden);
+ }
+ };
+ displayToggle = new JCheckBoxMenuItem(
+ MessageManager.getString("label.togglehidden"));
+ displayToggle.setEnabled(true);
+ displayToggle.setSelected(showHidden);
+ popup.add(displayToggle);
+ displayToggle.addActionListener(menuListener);
+ popup.show(this, e.getX(), e.getY());
+ }
+
+ /*
+ * Toggle overview display between showing hidden columns and hiding hidden columns
+ */
+ protected void toggleHiddenColumns()
+ {
+ showHidden = !showHidden;
+ createOverviewDimensions();
+ oviewCanvas.resetOviewDims(od);
+ updateOverviewImage();
+ setBoxPosition();
+ }
+
+ /**
+ * Updates the overview image when the related alignment panel is updated
+ */
+ public void updateOverviewImage()
+ {
+ if (oviewCanvas == null)
+ {
+ /*
+ * panel has been disposed
+ */
+ return;
+ }
+
+ if ((getWidth() > 0) && (getHeight() > 0))
+ {
+ od.setWidth(getWidth());
+ od.setHeight(getHeight() - progressPanel.getHeight());
+ }
+
+ setPreferredSize(new Dimension(od.getWidth(),
+ od.getHeight() + progressPanel.getHeight()));
+
+ if (oviewCanvas.restartDraw())
+ {
+ return;
+ }
+
+ Thread thread = new Thread(this);
+ thread.start();
+ repaint();
+
+
+ }
+
+ @Override
+ public void run()
+ {
+ if (oviewCanvas != null)
+ {
+ oviewCanvas.draw(av.isShowSequenceFeatures(),
+ (av.isShowAnnotation()
+ && av.getAlignmentConservationAnnotation() != null),
+ ap.getSeqPanel().seqCanvas.getFeatureRenderer());
+ setBoxPosition();
+ }
+ }
+
+ /**
+ * Update the overview panel box when the associated alignment panel is
+ * changed
+ *
+ */
+ private void setBoxPositionOnly()
+ {
+ if (od != null)
+ {
+ int oldX = od.getBoxX();
+ int oldY = od.getBoxY();
+ int oldWidth = od.getBoxWidth();
+ int oldHeight = od.getBoxHeight();
+ od.setBoxPosition(av.getAlignment().getHiddenSequences(),
+ av.getAlignment().getHiddenColumns());
+ repaint(oldX - 1, oldY - 1, oldWidth + 2, oldHeight + 2);
+ repaint(od.getBoxX(), od.getBoxY(), od.getBoxWidth(),
+ od.getBoxHeight());
+ }
+ }
+
+ private void setBoxPosition()
+ {
+ if (od != null)
+ {
+ od.setBoxPosition(av.getAlignment().getHiddenSequences(),
+ av.getAlignment().getHiddenColumns());
+ repaint();
+ }
+ }
+
+ @Override
+ public void propertyChange(PropertyChangeEvent evt)
+ {
+ setBoxPositionOnly();
+ }
+
+ /**
+ * Removes this object as a property change listener, and nulls references
+ */
+ protected void dispose()
+ {
+ try
+ {
+ if (av != null)
+ {
+ av.getRanges().removePropertyChangeListener(this);
+ }
+
+ oviewCanvas.dispose();
+
+ /*
+ * close the parent frame (which also removes it from the
+ * Desktop Windows menu)
+ */
+ ((JInternalFrame) SwingUtilities.getAncestorOfClass(
+ JInternalFrame.class, (this))).setClosed(true);
+ } catch (PropertyVetoException e)
+ {
+ // ignore
+ } finally
+ {
+ progressPanel = null;
+ av = null;
+ oviewCanvas = null;
+ ap = null;
+ od = null;
+ }
+ }
+}