this.ap = ap;
boolean sameLength = true;
-
+ boolean selected=av.getSelectionGroup()!=null && av.getSelectionGroup().getSize()>0;
AlignmentView seqstrings = av
- .getAlignmentView(av.getSelectionGroup() != null);
+ .getAlignmentView(selected);
boolean nucleotide = av.getAlignment().isNucleotide();
SequenceI[] seqs;
- if (av.getSelectionGroup() == null)
+ if (!selected)
{
seqs = av.getAlignment().getSequencesArray();
}