reload, just close this frame and open a new one

[jalview.git] / src / jalview / gui / PCAPanel.java

diff --git a/src/jalview/gui/PCAPanel.java b/src/jalview/gui/PCAPanel.java
index 9626a2c..d7e0cd7 100755 (executable)
--- a/src/jalview/gui/PCAPanel.java
+++ b/src/jalview/gui/PCAPanel.java
@@ -43,6 +43,7 @@ public class PCAPanel extends GPCAPanel implements Runnable
     PCA pca;\r
     int top;\r
     RotatableCanvas rc;\r
+    AlignmentPanel ap;\r
     AlignViewport av;\r
     AlignmentView seqstrings;\r
     SequenceI  [] seqs;\r
@@ -53,9 +54,10 @@ public class PCAPanel extends GPCAPanel implements Runnable
      * @param av DOCUMENT ME!\r
      * @param s DOCUMENT ME!\r
      */\r
-    public PCAPanel(AlignViewport av)\r
+    public PCAPanel(AlignmentPanel ap)\r
     {\r
-        this.av = av;\r
+        this.av = ap.av;\r
+        this.ap = ap;\r
 \r
         boolean sameLength = true;\r
 \r
@@ -97,7 +99,10 @@ public class PCAPanel extends GPCAPanel implements Runnable
                                400, 400);\r
 \r
 \r
-        rc = new RotatableCanvas(av);\r
+\r
+        PaintRefresher.Register(this, av.getSequenceSetId());\r
+\r
+        rc = new RotatableCanvas(ap);\r
         this.getContentPane().add(rc, BorderLayout.CENTER);\r
         Thread worker = new Thread(this);\r
         worker.start();\r
@@ -161,6 +166,9 @@ public class PCAPanel extends GPCAPanel implements Runnable
 \r
         rc.setPoints(points, pca.getM().rows);\r
         rc.repaint();\r
+\r
+        addKeyListener(rc);\r
+\r
       }\r
      catch(OutOfMemoryError er)\r
       { JOptionPane.showInternalMessageDialog(Desktop.desktop,\r
@@ -284,7 +292,10 @@ public class PCAPanel extends GPCAPanel implements Runnable
           if (true)\r
           {\r
               // make a new frame!\r
-              AlignFrame af = new AlignFrame(al, (ColumnSelection) alAndColsel[1]);\r
+              AlignFrame af = new AlignFrame(al, (ColumnSelection) alAndColsel[1],\r
+                                           AlignFrame.DEFAULT_WIDTH,\r
+                                           AlignFrame.DEFAULT_HEIGHT\r
+);\r
 \r
               //>>>This is a fix for the moment, until a better solution is found!!<<<\r
               // af.getFeatureRenderer().transferSettings(alignFrame.getFeatureRenderer());\r
@@ -293,8 +304,8 @@ public class PCAPanel extends GPCAPanel implements Runnable
               //                                     msaorder);\r
 \r
               Desktop.addInternalFrame(af, "Original Data for " + this.title,\r
-                                       AlignFrame.NEW_WINDOW_WIDTH,\r
-                                       AlignFrame.NEW_WINDOW_HEIGHT);\r
+                                       AlignFrame.DEFAULT_WIDTH,\r
+                                       AlignFrame.DEFAULT_HEIGHT);\r
             }\r
           }\r
           /*      CutAndPasteTransfer cap = new CutAndPasteTransfer();\r
@@ -407,4 +418,70 @@ public class PCAPanel extends GPCAPanel implements Runnable
          im.writeImage();\r
        }\r
     }\r
+\r
+\r
+    public void viewMenu_menuSelected()\r
+    {\r
+      buildAssociatedViewMenu();\r
+    }\r
+\r
+\r
+    void buildAssociatedViewMenu()\r
+    {\r
+      AlignmentPanel [] aps = PaintRefresher.getAssociatedPanels(av.getSequenceSetId());\r
+      if(aps.length==1 && rc.av ==aps[0].av)\r
+      {\r
+        associateViewsMenu.setVisible(false);\r
+        return;\r
+      }\r
+\r
+      associateViewsMenu.setVisible(true);\r
+\r
+      if( (viewMenu.getItem(viewMenu.getItemCount()-2) instanceof JMenuItem))\r
+      {\r
+        viewMenu.insertSeparator(viewMenu.getItemCount()-1);\r
+      }\r
+\r
+      associateViewsMenu.removeAll();\r
+\r
+\r
+      JRadioButtonMenuItem item;\r
+      ButtonGroup buttonGroup = new ButtonGroup();\r
+      int i, iSize = aps.length;\r
+      final PCAPanel thisPCAPanel = this;\r
+      for(i=0; i<iSize; i++)\r
+      {\r
+          final AlignmentPanel ap = aps[i];\r
+          item = new JRadioButtonMenuItem(ap.av.viewName, ap.av==rc.av );\r
+          buttonGroup.add(item);\r
+          item.addActionListener(new ActionListener()\r
+              {\r
+                public void actionPerformed(ActionEvent evt)\r
+                {\r
+                  rc.applyToAllViews = false;\r
+                  rc.av = ap.av;\r
+                  rc.ap = ap;\r
+                  PaintRefresher.Register(thisPCAPanel, ap.av.getSequenceSetId());\r
+                }\r
+              });\r
+\r
+          associateViewsMenu.add(item);\r
+      }\r
+\r
+      final JRadioButtonMenuItem itemf = new JRadioButtonMenuItem("All Views");\r
+\r
+      buttonGroup.add(itemf);\r
+\r
+      itemf.setSelected(rc.applyToAllViews);\r
+      itemf.addActionListener(new ActionListener()\r
+      {\r
+        public void actionPerformed(ActionEvent evt)\r
+        {\r
+          rc.applyToAllViews = itemf.isSelected();\r
+        }\r
+      });\r
+      associateViewsMenu.add(itemf);\r
+\r
+    }\r
+\r
   }\r