JAL-1824 updated caching procedure for pdb entries. Also refactored getPDBEntry metho...

[jalview.git] / src / jalview / gui / PDBSearchPanel.java

diff --git a/src/jalview/gui/PDBSearchPanel.java b/src/jalview/gui/PDBSearchPanel.java
index 4bd6f7c..06aa5df 100644 (file)
--- a/src/jalview/gui/PDBSearchPanel.java
+++ b/src/jalview/gui/PDBSearchPanel.java
@@ -98,6 +98,7 @@ public class PDBSearchPanel extends GPDBSearchPanel
         // System.out.println(">>>>>>>>>>>>>>>" + e.getMessage());
         // JOptionPane.showMessageDialog(this, e.getMessage(),
         // "PDB Web-service Error", JOptionPane.ERROR_MESSAGE);
+        e.printStackTrace();
         errorWarning.append(e.getMessage());
         checkForErrors();
         return;
@@ -175,12 +176,20 @@ public class PDBSearchPanel extends GPDBSearchPanel
     mainFrame.dispose();
   }
 
+  public void transferToSequenceFetcher(String ids)
+  {
+    // mainFrame.dispose();
+    seqFetcher.textArea.setText(ids);
+    Thread worker = new Thread(seqFetcher);
+    worker.start();
+  }
+
   /**
    * Add the discovered/selected sequences to a target alignment window
    */
   public void loadSelectedPDBSequencesToAlignment()
   {
-    mainFrame.dispose();
+    // mainFrame.dispose();
     StringBuilder selectedIds = new StringBuilder();
     HashSet<String> selectedIdsSet = new HashSet<String>();
     int pdbIdCol = PDBRestClient.getPDBIdColumIndex(wantedFields, false);
@@ -199,7 +208,7 @@ public class PDBSearchPanel extends GPDBSearchPanel
     }
 
     String ids = selectedIds.toString();
-    System.out.println(">>>>>>>>>>>>>>>> selected Ids: " + ids);
+    // System.out.println(">>>>>>>>>>>>>>>> selected Ids: " + ids);
     seqFetcher.textArea.setText(ids);
     Thread worker = new Thread(seqFetcher);
     worker.start();