Merge branch 'develop' into feature/JAL-4159_pasimap

[jalview.git] / src / jalview / gui / PairwiseAlignPanel.java

diff --git a/src/jalview/gui/PairwiseAlignPanel.java b/src/jalview/gui/PairwiseAlignPanel.java
index 087d7f6..af7913b 100755 (executable)
--- a/src/jalview/gui/PairwiseAlignPanel.java
+++ b/src/jalview/gui/PairwiseAlignPanel.java
@@ -170,7 +170,7 @@ System.out.println("Creating pap");
 
         if (!first)
         {
-          System.out.println(DASHES);
+          jalview.bin.Console.outPrintln(DASHES);
           textarea.append(DASHES);
          sb.append(DASHES);
         }
@@ -239,7 +239,7 @@ System.out.println("Creating pap");
 
     for (int i = 0; i < seqs.length; i++)
     {
-      System.out.println(
+      jalview.bin.Console.outPrintln(
               String.format("%3d %s", i + 1, seqs[i].getDisplayId(true)));
     }
 
@@ -251,7 +251,7 @@ System.out.println("Creating pap");
     {
       System.out.print(String.format("%7d", i + 1));
     }
-    System.out.println();
+    jalview.bin.Console.outPrintln();
 
     for (int i = 0; i < seqs.length; i++)
     {
@@ -263,10 +263,10 @@ System.out.println("Creating pap");
          */
         System.out.print(String.format("%7.3f", scores[i][j] / totscore));
       }
-      System.out.println();
+      jalview.bin.Console.outPrintln();
     }
 
-    System.out.println("\n");
+    jalview.bin.Console.outPrintln("\n");
   }
 
   /**