totscore = totscore + scores[i][j];
textarea.append(as.getOutput());
- seq = new Sequence(as.getAlignedSeq1().getName(), as.getAStr1(), as
- .getAlignedSeq1().getStart(), as.getAlignedSeq1().getEnd());
- sequences.add(seq);
-
- seq = new Sequence(as.getAlignedSeq2().getName(), as.getAStr2(), as
- .getAlignedSeq2().getStart(), as.getAlignedSeq2().getEnd());
- sequences.add(seq);
+ sequences.add(as.getAlignedSeq1());
+ sequences.add(as.getAlignedSeq1());
}
}