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getViewAsString can ignore sequenceGroup
[jalview.git] / src / jalview / gui / PairwiseAlignPanel.java
diff --git a/src/jalview/gui/PairwiseAlignPanel.java b/src/jalview/gui/PairwiseAlignPanel.java
index ba961ee..ba3c9ac 100755 (executable)
--- a/src/jalview/gui/PairwiseAlignPanel.java
+++ b/src/jalview/gui/PairwiseAlignPanel.java
@@ -54,7 +54,7 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel
         sequences = new Vector();\r
 \r
         SequenceI [] seqs;\r
-        String []  seqStrings = av.getSelectionAsString();\r
+        String []  seqStrings = av.getViewAsString(true);\r
 \r
         if(av.getSelectionGroup()==null)\r
         {\r