PopupMenu displays URL links

[jalview.git] / src / jalview / gui / PopupMenu.java

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index 968262b..480b195 100755 (executable)
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -32,6 +32,8 @@ import java.awt.event.*;
 \r
 import javax.swing.*;\r
 \r
+import java.util.Vector;\r
+\r
 \r
 /**\r
  * DOCUMENT ME!\r
@@ -68,11 +70,12 @@ public class PopupMenu extends JPopupMenu
     JCheckBoxMenuItem showBoxes = new JCheckBoxMenuItem();\r
     JCheckBoxMenuItem showText = new JCheckBoxMenuItem();\r
     JCheckBoxMenuItem showColourText = new JCheckBoxMenuItem();\r
-  JMenu jMenu1 = new JMenu();\r
+  JMenu editMenu = new JMenu();\r
   JMenuItem cut = new JMenuItem();\r
   JMenuItem copy = new JMenuItem();\r
   JMenuItem upperCase = new JMenuItem();\r
   JMenuItem lowerCase = new JMenuItem();\r
+  JMenuItem toggle = new JMenuItem();\r
 \r
   /**\r
      * Creates a new PopupMenu object.\r
@@ -80,7 +83,7 @@ public class PopupMenu extends JPopupMenu
      * @param ap DOCUMENT ME!\r
      * @param seq DOCUMENT ME!\r
      */\r
-    public PopupMenu(final AlignmentPanel ap, Sequence seq)\r
+    public PopupMenu(final AlignmentPanel ap, Sequence seq, Vector links)\r
     {\r
         ///////////////////////////////////////////////////////////\r
         // If this is activated from the sequence panel, the user may want to\r
@@ -233,7 +236,10 @@ public class PopupMenu extends JPopupMenu
             showBoxes.setSelected(sg.getDisplayBoxes());\r
         }\r
         else\r
+        {\r
           groupMenu.setVisible(false);\r
+          editMenu.setVisible(false);\r
+        }\r
 \r
         if (!ap.av.alignment.getGroups().contains(sg))\r
         {\r
@@ -248,24 +254,31 @@ public class PopupMenu extends JPopupMenu
         {\r
             sequenceMenu.setVisible(false);\r
         }\r
-        else\r
-        {\r
-          java.util.Vector links = Preferences.sequenceURLLinks;\r
 \r
+        if(links != null && links.size()>0)\r
+        {\r
           JMenu linkMenu = new JMenu("Link");\r
           JMenuItem item;\r
           for(int i=0; i<links.size(); i++)\r
           {\r
             String link = links.elementAt(i).toString();\r
+            final String label = link.substring(0, link.indexOf("|"));\r
+            item = new JMenuItem(label);\r
+            final String url;\r
 \r
-            item = new JMenuItem(link.substring(0, link.indexOf("|")));\r
-            String id = sequence.getName();\r
-            if(id.indexOf("|")>-1)\r
-              id = id.substring(id.lastIndexOf("|")+1);\r
-\r
-            final String url = link.substring(link.indexOf("|")+1, link.indexOf("$SEQUENCE_ID$"))\r
-                + id +\r
-                link.substring(link.indexOf("$SEQUENCE_ID$") + 13);\r
+            if (link.indexOf("$SEQUENCE_ID$") > -1)\r
+            {\r
+              String id = seq.getName();\r
+              if (id.indexOf("|") > -1)\r
+                id = id.substring(id.lastIndexOf("|") + 1);\r
+\r
+              url = link.substring(link.indexOf("|") + 1,\r
+                                   link.indexOf("$SEQUENCE_ID$"))\r
+                  + id +\r
+                  link.substring(link.indexOf("$SEQUENCE_ID$") + 13);\r
+            }\r
+            else\r
+              url = link.substring(link.lastIndexOf("|")+1);\r
 \r
 \r
             item.addActionListener(new java.awt.event.ActionListener()\r
@@ -362,7 +375,7 @@ public class PopupMenu extends JPopupMenu
                     showColourText_actionPerformed(e);\r
                 }\r
             });\r
-    jMenu1.setText("Edit");\r
+    editMenu.setText("Edit");\r
     cut.setText("Cut");\r
     cut.addActionListener(new ActionListener()\r
     {\r
@@ -395,9 +408,17 @@ public class PopupMenu extends JPopupMenu
         lowerCase_actionPerformed(e);\r
       }\r
     });\r
+    toggle.setText("Toggle Case");\r
+    toggle.addActionListener(new ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        toggle_actionPerformed(e);\r
+      }\r
+    });\r
     add(groupMenu);\r
         add(sequenceMenu);\r
-    this.add(jMenu1);\r
+    this.add(editMenu);\r
     groupMenu.add(groupName);\r
         groupMenu.addSeparator();\r
         groupMenu.add(unGroupMenuItem);\r
@@ -447,10 +468,11 @@ public class PopupMenu extends JPopupMenu
         colourMenu.addSeparator();\r
         colourMenu.add(abovePIDColour);\r
         colourMenu.add(conservationMenuItem);\r
-    jMenu1.add(copy);\r
-    jMenu1.add(cut);\r
-    jMenu1.add(upperCase);\r
-    jMenu1.add(lowerCase);\r
+    editMenu.add(copy);\r
+    editMenu.add(cut);\r
+    editMenu.add(upperCase);\r
+    editMenu.add(lowerCase);\r
+    editMenu.add(toggle);\r
     noColourmenuItem.setText("None");\r
         noColourmenuItem.addActionListener(new java.awt.event.ActionListener()\r
             {\r
@@ -1069,4 +1091,18 @@ public class PopupMenu extends JPopupMenu
     ap.repaint();\r
   }\r
 \r
+  public void toggle_actionPerformed(ActionEvent e)\r
+  {\r
+    SequenceGroup sg = ap.av.getSelectionGroup();\r
+    if (sg == null)\r
+      return;\r
+\r
+    for (int g = 0; g < sg.getSize(); g++)\r
+    {\r
+      sg.getSequenceAt(g).toggleCase(sg.getStartRes(), sg.getEndRes() + 1);\r
+    }\r
+\r
+    ap.repaint();\r
+  }\r
+\r
 }\r