showUnconserved view and group setting

[jalview.git] / src / jalview / gui / PopupMenu.java

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index f16e647..5cf06b2 100755 (executable)
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -94,6 +94,8 @@ public class PopupMenu extends JPopupMenu
 
   JCheckBoxMenuItem showColourText = new JCheckBoxMenuItem();
 
+  JCheckBoxMenuItem displayNonconserved = new JCheckBoxMenuItem();
+
   JMenu editMenu = new JMenu();
 
   JMenuItem cut = new JMenuItem();
@@ -378,7 +380,7 @@ public class PopupMenu extends JPopupMenu
       {
         conservationMenuItem.setSelected(true);
       }
-
+      displayNonconserved.setSelected(sg.getShowunconserved());
       showText.setSelected(sg.getDisplayText());
       showColourText.setSelected(sg.getColourText());
       showBoxes.setSelected(sg.getDisplayBoxes());
@@ -616,6 +618,15 @@ public class PopupMenu extends JPopupMenu
         showColourText_actionPerformed();
       }
     });
+    displayNonconserved.setText("Show Nonconserved");
+    displayNonconserved.setState(true);
+    displayNonconserved.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        showNonconserved_actionPerformed();
+      }
+    });
     editMenu.setText("Edit");
     cut.setText("Cut");
     cut.addActionListener(new ActionListener()
@@ -781,6 +792,7 @@ public class PopupMenu extends JPopupMenu
     jMenu1.add(showText);
     jMenu1.add(showColourText);
     jMenu1.add(outline);
+    jMenu1.add(displayNonconserved);
     structureMenu.add(pdbMenu);
     structureMenu.add(viewStructureMenu);
     // structureMenu.add(colStructureMenu);
@@ -901,8 +913,14 @@ public class PopupMenu extends JPopupMenu
             });
   }
 
+  protected void showNonconserved_actionPerformed()
+  {
+    getGroup().setShowunconserved(displayNonconserved.isSelected());
+    refresh();
+  }
+
   /**
-   * DOCUMENT ME!
+   * call to refresh view after settings change
    */
   void refresh()
   {