Make cancelled public variable

[jalview.git] / src / jalview / gui / PopupMenu.java

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index 137ca14..6055230 100755 (executable)
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -494,6 +494,9 @@ public class PopupMenu extends JPopupMenu
             superG.setSuperGroupProperties(sg);\r
           }\r
         }\r
+        if (ap.overviewPanel != null)\r
+          ap.overviewPanel.updateOverviewImage();\r
+\r
         ap.seqPanel.repaint();\r
     }\r
 \r
@@ -606,6 +609,8 @@ public class PopupMenu extends JPopupMenu
     protected void abovePIDColour_actionPerformed(ActionEvent e)\r
     {\r
         SequenceGroup sg = getGroup();\r
+        if(sg.cs==null)\r
+          return;\r
 \r
         if (abovePIDColour.isSelected())\r
         {\r
@@ -696,6 +701,8 @@ public class PopupMenu extends JPopupMenu
     protected void conservationMenuItem_actionPerformed(ActionEvent e)\r
     {\r
         SequenceGroup sg = getGroup();\r
+        if(sg.cs==null)\r
+          return;\r
 \r
         if (conservationMenuItem.isSelected())\r
         {\r
@@ -788,7 +795,7 @@ public class PopupMenu extends JPopupMenu
      */\r
     void sequenceName_actionPerformed(ActionEvent e)\r
     {\r
-        String id = sequence.getName();\r
+        String id = sequence.getDisplayId(false, false);\r
         String s = (String) JOptionPane.showInternalInputDialog(ap,\r
                 "Edit sequence name",\r
                 "Edit sequence name (" + sequence.getName() + ")",\r