JAL-2629 choice of hmm profile now a parameter not a selection, apis simplified

[jalview.git] / src / jalview / gui / PopupMenu.java

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index e62853d..a3a2422 100644 (file)
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -360,21 +360,6 @@ public class PopupMenu extends JPopupMenu implements ColourChangeListener
       });
       add(menuItem);
 
-      if (sequence.hasHMMProfile())
-      {
-        JMenuItem selectHMM = new JCheckBoxMenuItem();
-        selectHMM.setText(MessageManager.getString("label.select_hmm"));
-        selectHMM.addActionListener(new ActionListener()
-        {
-          @Override
-          public void actionPerformed(ActionEvent e)
-          {
-            selectHMM_actionPerformed(sequence);
-          }
-        });
-        add(selectHMM);
-      }
-
       if (alignPanel.av.getSelectionGroup() != null
               && alignPanel.av.getSelectionGroup().getSize() > 1)
       {
@@ -1368,15 +1353,6 @@ public class PopupMenu extends JPopupMenu implements ColourChangeListener
     jMenu1.add(displayNonconserved);
   }
 
-  protected void selectHMM_actionPerformed(SequenceI seq)
-  {
-    // TODO move this to Viewport
-    if (seq.hasHMMProfile())
-    {
-      ap.alignFrame.setSelectedHMMSequence(seq);
-    }
-  }
-
   /**
    * Constructs the entries for the colour menu
    */