\r
protected void abovePIDColour_actionPerformed(ActionEvent e)\r
{\r
- if(abovePIDColour.isSelected())\r
-{\r
+ SequenceGroup sg = getGroup();\r
+ if (abovePIDColour.isSelected())\r
+ {\r
+ sg.cs.setConsensus(AAFrequency.calculate(sg.sequences, 0,\r
+ ap.av.alignment.getWidth()));\r
+ int threshold = SliderPanel.setPIDSliderSource(ap, sg.cs, getGroup().getName());\r
+ if (sg.cs instanceof ResidueColourScheme)\r
+ ( (ResidueColourScheme)sg. cs).setThreshold(threshold);\r
+ else if (sg.cs instanceof ScoreColourScheme)\r
+ ( (ScoreColourScheme) sg.cs).setThreshold(threshold);\r
\r
- Desktop.setPIDSliderSource(ap, getGroup().cs, getGroup().getName());\r
- refresh();\r
-}\r
-else // remove PIDColouring\r
-{\r
- ColourSchemeI cs = getGroup().cs;\r
- ResidueColourScheme rcs = (ResidueColourScheme)cs;\r
- rcs.setThreshold(0);\r
- getGroup().cs = rcs;\r
- refresh();\r
-}\r
+ SliderPanel.showPIDSlider();\r
\r
+ }\r
+ else // remove PIDColouring\r
+ {\r
+ ResidueColourScheme rcs = (ResidueColourScheme) sg.cs;\r
+ rcs.setThreshold(0);\r
+ sg.cs = rcs;\r
+ }\r
\r
+ refresh();\r
\r
}\r
\r
\r
protected void BLOSUM62Colour_actionPerformed(ActionEvent e)\r
{\r
- getGroup().cs = new Blosum62ColourScheme(ap.av);\r
+ getGroup().cs = new Blosum62ColourScheme();\r
refresh();\r
}\r
\r
\r
sg.cs = ccs;\r
\r
- Desktop.setConservationSliderSource(ap, ccs, sg.getName());\r
+ SliderPanel.setConservationSlider(ap, ccs, sg.getName());\r
+ SliderPanel.showConservationSlider();\r
}\r
else // remove ConservationColouring\r
{\r