JAL-2814 JAL-3032 targeted help URL links for JalviewJS

[jalview.git] / src / jalview / gui / Preferences.java

diff --git a/src/jalview/gui/Preferences.java b/src/jalview/gui/Preferences.java
index 92854ad..284d3af 100755 (executable)
--- a/src/jalview/gui/Preferences.java
+++ b/src/jalview/gui/Preferences.java
@@ -24,6 +24,7 @@ import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
 import jalview.bin.Cache;
 import jalview.gui.Help.HelpId;
 import jalview.gui.StructureViewer.ViewerType;
+import jalview.io.BackupFiles;
 import jalview.io.FileFormatI;
 import jalview.io.JalviewFileChooser;
 import jalview.io.JalviewFileView;
@@ -54,6 +55,7 @@ import java.util.ArrayList;
 import java.util.List;
 
 import javax.help.HelpSetException;
+import javax.swing.JComboBox;
 import javax.swing.JFileChooser;
 import javax.swing.JInternalFrame;
 import javax.swing.JPanel;
@@ -187,11 +189,13 @@ public class Preferences extends GPreferences
     super();
     frame = new JInternalFrame();
     frame.setContentPane(this);
-    wsPrefs = new WsPreferences();
-    wsTab.add(wsPrefs, BorderLayout.CENTER);
+    if (!Platform.isJS())
+    {
+      wsPrefs = new WsPreferences();
+      wsTab.add(wsPrefs, BorderLayout.CENTER);
+    }
     int width = 500, height = 450;
-    new jalview.util.Platform();
-    if (Platform.isAMac())
+    if (Platform.isAMacAndNotJS())
     {
       width = 570;
       height = 480;
@@ -501,23 +505,9 @@ public class Preferences extends GPreferences
     /*
      * Set Output tab defaults
      */
-    epsRendering.addItem(promptEachTimeOpt);
-    epsRendering.addItem(lineArtOpt);
-    epsRendering.addItem(textOpt);
-    String defaultEPS = Cache.getDefault("EPS_RENDERING",
-            "Prompt each time");
-    if (defaultEPS.equalsIgnoreCase("Text"))
-    {
-      epsRendering.setSelectedItem(textOpt);
-    }
-    else if (defaultEPS.equalsIgnoreCase("Lineart"))
-    {
-      epsRendering.setSelectedItem(lineArtOpt);
-    }
-    else
-    {
-      epsRendering.setSelectedItem(promptEachTimeOpt);
-    }
+    setupOutputCombo(epsRendering, "EPS_RENDERING");
+    setupOutputCombo(htmlRendering, "HTML_RENDERING");
+    setupOutputCombo(svgRendering, "SVG_RENDERING");
     autoIdWidth.setSelected(Cache.getDefault("FIGURE_AUTOIDWIDTH", false));
     userIdWidth.setEnabled(!autoIdWidth.isSelected());
     userIdWidthlabel.setEnabled(!autoIdWidth.isSelected());
@@ -546,6 +536,45 @@ public class Preferences extends GPreferences
 
     annotations_actionPerformed(null); // update the display of the annotation
                                        // settings
+    
+    
+    /*
+     * Set Backups tab defaults
+     */
+    loadLastSavedBackupsOptions();
+  }
+
+  /**
+   * A helper method that sets the items and initial selection in a character
+   * rendering option list (Prompt each time/Lineart/Text)
+   * 
+   * @param comboBox
+   * @param propertyKey
+   */
+  protected void setupOutputCombo(JComboBox<Object> comboBox,
+          String propertyKey)
+  {
+    comboBox.addItem(promptEachTimeOpt);
+    comboBox.addItem(lineArtOpt);
+    comboBox.addItem(textOpt);
+    
+    /*
+     * JalviewJS doesn't support Lineart so force it to Text
+     */
+    String defaultOption = Platform.isJS() ? "Text"
+            : Cache.getDefault(propertyKey, "Prompt each time");
+    if (defaultOption.equalsIgnoreCase("Text"))
+    {
+      comboBox.setSelectedItem(textOpt);
+    }
+    else if (defaultOption.equalsIgnoreCase("Lineart"))
+    {
+      comboBox.setSelectedItem(lineArtOpt);
+    }
+    else
+    {
+      comboBox.setSelectedItem(promptEachTimeOpt);
+    }
   }
 
   /**
@@ -684,6 +713,10 @@ public class Preferences extends GPreferences
      */
     Cache.applicationProperties.setProperty("EPS_RENDERING",
             ((OptionsParam) epsRendering.getSelectedItem()).getCode());
+    Cache.applicationProperties.setProperty("HTML_RENDERING",
+            ((OptionsParam) htmlRendering.getSelectedItem()).getCode());
+    Cache.applicationProperties.setProperty("SVG_RENDERING",
+            ((OptionsParam) svgRendering.getSelectedItem()).getCode());
 
     /*
      * Save Connections settings
@@ -793,7 +826,31 @@ public class Preferences extends GPreferences
     Cache.applicationProperties.setProperty("PAD_GAPS",
             Boolean.toString(padGaps.isSelected()));
 
-    wsPrefs.updateAndRefreshWsMenuConfig(false);
+    if (!Platform.isJS())
+    {
+      wsPrefs.updateAndRefreshWsMenuConfig(false);
+    }
+
+    /*
+     * Save Backups settings
+     */
+    Cache.applicationProperties.setProperty(BackupFiles.CONFIRM_DELETE_OLD,
+            Boolean.toString(backupfilesConfirmDelete.isSelected()));
+    Cache.applicationProperties.setProperty(BackupFiles.ENABLED,
+            Boolean.toString(enableBackupFiles.isSelected()));
+    Cache.applicationProperties.setProperty(BackupFiles.NO_MAX,
+            Boolean.toString(backupfilesKeepAll.isSelected()));
+    Cache.applicationProperties.setProperty(BackupFiles.REVERSE_ORDER,
+            Boolean.toString(suffixReverse.isSelected()));
+    Cache.applicationProperties.setProperty(BackupFiles.SUFFIX,
+            suffixTemplate.getText());
+    Cache.applicationProperties.setProperty(BackupFiles.ROLL_MAX,
+            Integer.toString(getSpinnerInt(backupfilesRollMaxSpinner, 4)));
+    Cache.applicationProperties.setProperty(BackupFiles.SUFFIX_DIGITS,
+            Integer.toString(getSpinnerInt(suffixDigitsSpinner, 3)));
+    Cache.applicationProperties.setProperty(BackupFiles.NS+"_PRESET",
+            Integer.toString(getComboIntStringKey(backupfilesPresetsCombo)));
+
     Cache.saveProperties();
     Desktop.instance.doConfigureStructurePrefs();
     try
@@ -867,8 +924,11 @@ public class Preferences extends GPreferences
   {
     try
     {
-      wsPrefs.updateWsMenuConfig(true);
-      wsPrefs.refreshWs_actionPerformed(e);
+      if (!Platform.isJS())
+      {
+        wsPrefs.updateWsMenuConfig(true);
+        wsPrefs.refreshWs_actionPerformed(e);
+      }
       frame.setClosed(true);
     } catch (Exception ex)
     {