*/\r
package jalview.gui;\r
\r
-import jalview.bin.*;\r
-\r
import jalview.io.*;\r
\r
import jalview.jbgui.*;\r
\r
fullID.setSelected( Cache.getDefault("SHOW_FULL_ID", true));\r
fullScreen.setSelected( Cache.getDefault("SHOW_FULLSCREEN", false));\r
- annotations.setSelected( Cache.getDefault("SHOW_FULL_ID", true));\r
- conservation.setEnabled( Cache.getDefault("SHOW_ANNOTATIONS", true));\r
+ annotations.setSelected( Cache.getDefault("SHOW_ANNOTATIONS", true));\r
\r
+ conservation.setEnabled( Cache.getDefault("SHOW_ANNOTATIONS", true));\r
quality.setEnabled(Cache.getDefault("SHOW_ANNOTATIONS", true));\r
identity.setEnabled(Cache.getDefault("SHOW_ANNOTATIONS", true));\r
\r
quality.setSelected(Cache.getDefault("SHOW_QUALITY", true));\r
identity.setSelected(Cache.getDefault("SHOW_IDENTITY", true));\r
\r
- for (int i = 0; i < 12; i++)\r
+ for (int i = 0; i < 13; i++)\r
{\r
colour.addItem(ColourSchemeProperty.getColourName(i));\r
}\r
\r
- String string = Cache.getProperty("DEFAULT_COLOUR");\r
+ String string = Cache.getDefault("DEFAULT_COLOUR", "None");\r
\r
- if (string != null)\r
- {\r
- colour.setSelectedItem(string);\r
- }\r
- else\r
- {\r
- colour.setSelectedIndex(11);\r
- }\r
+ colour.setSelectedItem(string);\r
\r
String[] fonts = java.awt.GraphicsEnvironment.getLocalGraphicsEnvironment()\r
.getAvailableFontFamilyNames();\r
startupFileTextfield.setText(Cache.getDefault("STARTUP_FILE",\r
"http://www.jalview.org/examples/exampleFile.jar"));\r
\r
+ sortby.addItem("No sort");\r
+ sortby.addItem("Id");\r
+ sortby.addItem("Pairwise Identity");\r
+ sortby.setSelectedItem( Cache.getDefault("SORT_ALIGNMENT", "No sort") );\r
+\r
+ epsRendering.addItem("Prompt each time");\r
+ epsRendering.addItem("Lineart");\r
+ epsRendering.addItem("Text");\r
+ epsRendering.setSelectedItem( Cache.getDefault("EPS_RENDERING", "Prompt each time"));\r
+\r
/****************************************************\r
* Set up Connections\r
*/\r
Cache.applicationProperties.setProperty("STARTUP_FILE", startupFileTextfield.getText());\r
Cache.applicationProperties.setProperty("SHOW_STARTUP_FILE", Boolean.toString(startupCheckbox.isSelected()));\r
\r
+ Cache.applicationProperties.setProperty("SORT_ALIGNMENT", sortby.getSelectedItem().toString() );\r
+\r
+ if(epsRendering.getSelectedItem().equals("Prompt each time"))\r
+ Cache.applicationProperties.remove("EPS_RENDERING");\r
+ else\r
+ Cache.applicationProperties.setProperty("EPS_RENDERING", epsRendering.getSelectedItem().toString());\r
+\r
if(defaultBrowser.getText().trim().length()<1)\r
Cache.applicationProperties.remove("DEFAULT_BROWSER");\r
else\r