+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ */\r
package jalview.gui;\r
\r
+import jalview.bin.*;\r
+\r
+import jalview.io.*;\r
+\r
import jalview.jbgui.*;\r
+\r
import jalview.schemes.*;\r
-import jalview.io.*;\r
\r
-import jalview.bin.Cache;\r
-import javax.swing.*;\r
-import java.awt.event.ActionEvent;\r
import java.awt.*;\r
+import java.awt.event.*;\r
+\r
+import javax.swing.*;\r
\r
\r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @author $author$\r
+ * @version $Revision$\r
+ */\r
public class Preferences extends GPreferences\r
{\r
- static boolean preferencesLoaded=false;\r
-\r
- public static boolean showFullscreen=false;\r
- public static boolean showFullId=true;\r
- public static boolean showAnnotation=true;\r
- public static boolean showConservation=true;\r
- public static boolean showQuality=true;\r
- public static boolean showIdentity=true;\r
- public static String fontName;\r
- public static String fontSize;\r
- public static String fontStyle;\r
- public static char gapSymbol='-';\r
- public static String defaultColour=null;\r
- public static boolean showStartupFile=true;\r
- public static String startupFile = "http://www.compbio.dundee.ac.uk/~andrew/jalviewTEST/fasta";\r
-\r
- JInternalFrame frame;\r
-\r
- public static void initPreferences()\r
- {\r
- String string = Cache.getProperty("SHOW_FULL_ID");\r
- if(string!=null)\r
- showFullId = Boolean.valueOf(string).booleanValue();\r
-\r
- string = Cache.getProperty("SHOW_FULLSCREEN");\r
- if(string!=null)\r
- showFullscreen = Boolean.valueOf(string).booleanValue();\r
-\r
- string = Cache.getProperty("SHOW_ANNOTATIONS");\r
- if(string!=null)\r
- showAnnotation = Boolean.valueOf(string).booleanValue();\r
-\r
- string = Cache.getProperty("SHOW_CONSERVATION");\r
- if(string!=null)\r
- showConservation = Boolean.valueOf(string).booleanValue();\r
- string = Cache.getProperty("SHOW_QUALITY");\r
- if(string!=null)\r
- showQuality = Boolean.valueOf(string).booleanValue();\r
- string = Cache.getProperty("SHOW_IDENTITY");\r
- if(string!=null)\r
- showIdentity = Boolean.valueOf(string).booleanValue();\r
-\r
- string = Cache.getProperty("GAP_SYMBOL");\r
- if(string!=null)\r
- gapSymbol = string.charAt(0);\r
-\r
- string = Cache.getProperty("SHOW_FULL_ID");\r
- if(string!=null)\r
- showFullId = Boolean.valueOf(string).booleanValue();\r
-\r
- fontName = Cache.getProperty("FONT_NAME");\r
- fontStyle = Cache.getProperty("FONT_STYLE");\r
- fontSize = Cache.getProperty("FONT_SIZE");\r
-\r
- string = Cache.getProperty("DEFAULT_COLOUR");\r
- if(string!=null)\r
- defaultColour = string;\r
-\r
- string = Cache.getProperty("STARTUP_FILE");\r
- if(string!=null)\r
- startupFile = string;\r
-\r
- string = Cache.getProperty("SHOW_STARTUP_FILE");\r
- if(string!=null)\r
- showStartupFile = Boolean.valueOf(string).booleanValue();\r
-\r
- preferencesLoaded = true;\r
- }\r
-\r
- public Preferences()\r
- {\r
- if(!preferencesLoaded)\r
- initPreferences();\r
-\r
- frame = new JInternalFrame();\r
- frame.setContentPane(this);\r
- Desktop.addInternalFrame(frame, "Preferences", 480,390 );\r
-\r
- fullID.setSelected(showFullId);\r
- String string = Cache.getProperty("SHOW_FULLSCREEN");\r
- boolean value = false;\r
- if(string!=null)\r
- value = Boolean.valueOf(string).booleanValue();\r
-\r
- fullScreen.setSelected(value);\r
- annotations.setSelected(showAnnotation);\r
-\r
- conservation.setEnabled(showAnnotation);\r
- quality.setEnabled(showAnnotation);\r
- identity.setEnabled(showAnnotation);\r
-\r
- conservation.setSelected(showConservation);\r
- quality.setSelected(showQuality);\r
- identity.setSelected(showIdentity);\r
-\r
- for(int i=0; i<12; i++)\r
- colour.addItem( ColourSchemeProperty.getColourName(i) );\r
-\r
- string = Cache.getProperty("DEFAULT_COLOUR");\r
- if(string!=null)\r
- colour.setSelectedItem( string );\r
- else\r
- colour.setSelectedIndex( 11 );\r
-\r
- String fonts[] = java.awt.GraphicsEnvironment.getLocalGraphicsEnvironment().getAvailableFontFamilyNames();\r
- for(int i=0; i<fonts.length; i++)\r
- fontNameCB.addItem(fonts[i]);\r
-\r
- for(int i=1; i<31; i++)\r
- fontSizeCB.addItem(i+"");\r
-\r
- fontStyleCB.addItem("plain");\r
- fontStyleCB.addItem("bold");\r
- fontStyleCB.addItem("italic");\r
-\r
- fontNameCB.setSelectedItem(fontName);\r
- fontSizeCB.setSelectedItem(fontSize);\r
- fontStyleCB.setSelectedItem(fontStyle);\r
-\r
- gapSymbolCB.addItem("-");\r
- gapSymbolCB.addItem(".");\r
-\r
- gapSymbolCB.setSelectedItem( gapSymbol+"" );\r
-\r
- startupCheckbox.setSelected(showStartupFile);\r
- startupFileTextfield.setText(startupFile);\r
-\r
- }\r
-\r
- public void ok_actionPerformed(ActionEvent e)\r
- {\r
- showFullId = fullID.isSelected() ;\r
- showFullscreen = fullScreen.isSelected();\r
- showAnnotation = annotations.isSelected();\r
- showConservation = conservation.isSelected();\r
- showQuality = quality.isSelected();\r
- showIdentity = identity.isSelected();\r
- defaultColour = colour.getSelectedItem().toString();\r
- gapSymbol = gapSymbolCB.getSelectedItem().toString().charAt(0);\r
- fontName = fontNameCB.getSelectedItem().toString();\r
- fontSize = fontSizeCB.getSelectedItem().toString();\r
- fontStyle = fontStyleCB.getSelectedItem().toString();\r
- startupFile = startupFileTextfield.getText();\r
- showStartupFile = startupCheckbox.isSelected();\r
-\r
- Cache.setProperty("SHOW_FULL_ID", Boolean.toString(showFullId));\r
- Cache.setProperty("SHOW_FULLSCREEN", Boolean.toString( showFullscreen ) );\r
-\r
- Cache.setProperty("SHOW_ANNOTATIONS", Boolean.toString( showAnnotation ));\r
- Cache.setProperty("SHOW_CONSERVATION", Boolean.toString( showConservation ));\r
- Cache.setProperty("SHOW_QUALITY", Boolean.toString( showQuality ));\r
- Cache.setProperty("SHOW_IDENTITY", Boolean.toString( showIdentity ));\r
-\r
- Cache.setProperty("DEFAULT_COLOUR", defaultColour);\r
- Cache.setProperty("GAP_SYMBOL", gapSymbol+"");\r
-\r
- Cache.setProperty("FONT_NAME", fontName);\r
- Cache.setProperty("FONT_STYLE", fontStyle);\r
- Cache.setProperty("FONT_SIZE", fontSize);\r
-\r
- Cache.setProperty("STARTUP_FILE", startupFile);\r
- Cache.setProperty("SHOW_STARTUP_FILE", Boolean.toString(showStartupFile));\r
-\r
-\r
-\r
- try {\r
- frame.setClosed(true);\r
- } catch (Exception ex) {}\r
-\r
- }\r
-\r
- public void startupFileTextfield_mouseClicked()\r
- {\r
- JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.getProperty("LAST_DIRECTORY"),\r
- new String[]{"fa, fasta, fastq", "aln", "pfam", "msf", "pir","blc","jar"},\r
- new String[]{"Fasta", "Clustal", "PFAM", "MSF", "PIR", "BLC", "Jalview"}\r
- ,null);\r
- chooser.setFileView(new JalviewFileView());\r
- chooser.setDialogTitle("Select startup file");\r
- int value = chooser.showOpenDialog(this);\r
- if(value == JalviewFileChooser.APPROVE_OPTION)\r
- {\r
- startupFileTextfield.setText( chooser.getSelectedFile().getAbsolutePath() );\r
- }\r
- }\r
-\r
-\r
- public void cancel_actionPerformed(ActionEvent e)\r
- {\r
- try{\r
- frame.setClosed(true);\r
- }catch(Exception ex){}\r
- }\r
-\r
- public void annotations_actionPerformed(ActionEvent e)\r
- {\r
- conservation.setEnabled(annotations.isSelected());\r
- quality.setEnabled(annotations.isSelected());\r
- identity.setEnabled(annotations.isSelected());\r
- }\r
+ static boolean preferencesLoaded = false;\r
+\r
+ /** DOCUMENT ME!! */\r
+ public static boolean showFullscreen = false;\r
+\r
+ /** DOCUMENT ME!! */\r
+ public static boolean showFullId = true;\r
+\r
+ /** DOCUMENT ME!! */\r
+ public static boolean showAnnotation = true;\r
+\r
+ /** DOCUMENT ME!! */\r
+ public static boolean showConservation = true;\r
+\r
+ /** DOCUMENT ME!! */\r
+ public static boolean showQuality = true;\r
+\r
+ /** DOCUMENT ME!! */\r
+ public static boolean showIdentity = true;\r
+\r
+ /** DOCUMENT ME!! */\r
+ public static String fontName = "SansSerif";\r
+\r
+ /** DOCUMENT ME!! */\r
+ public static String fontSize = "10";\r
+\r
+ /** DOCUMENT ME!! */\r
+ public static String fontStyle = Font.PLAIN + "";\r
+\r
+ /** DOCUMENT ME!! */\r
+ public static char gapSymbol = '-';\r
+\r
+ /** DOCUMENT ME!! */\r
+ public static String defaultColour = null;\r
+\r
+ /** DOCUMENT ME!! */\r
+ public static boolean showStartupFile = true;\r
+\r
+ /** DOCUMENT ME!! */\r
+ public static String startupFile = "http://www.jalview.org/examples/exampleFile.jar";\r
+ JInternalFrame frame;\r
+\r
+ /**\r
+ * Creates a new Preferences object.\r
+ */\r
+ public Preferences()\r
+ {\r
+ initPreferences();\r
+\r
+ frame = new JInternalFrame();\r
+ frame.setContentPane(this);\r
+ Desktop.addInternalFrame(frame, "Preferences", 480, 390);\r
+\r
+ fullID.setSelected(showFullId);\r
+\r
+ String string = Cache.getProperty("SHOW_FULLSCREEN");\r
+ boolean value = false;\r
+\r
+ if (string != null)\r
+ {\r
+ value = Boolean.valueOf(string).booleanValue();\r
+ }\r
+\r
+ fullScreen.setSelected(value);\r
+ annotations.setSelected(showAnnotation);\r
+\r
+ conservation.setEnabled(showAnnotation);\r
+ quality.setEnabled(showAnnotation);\r
+ identity.setEnabled(showAnnotation);\r
+\r
+ conservation.setSelected(showConservation);\r
+ quality.setSelected(showQuality);\r
+ identity.setSelected(showIdentity);\r
+\r
+ for (int i = 0; i < 12; i++)\r
+ {\r
+ colour.addItem(ColourSchemeProperty.getColourName(i));\r
+ }\r
+\r
+ string = Cache.getProperty("DEFAULT_COLOUR");\r
+\r
+ if (string != null)\r
+ {\r
+ colour.setSelectedItem(string);\r
+ }\r
+ else\r
+ {\r
+ colour.setSelectedIndex(11);\r
+ }\r
+\r
+ String[] fonts = java.awt.GraphicsEnvironment.getLocalGraphicsEnvironment()\r
+ .getAvailableFontFamilyNames();\r
+\r
+ for (int i = 0; i < fonts.length; i++)\r
+ {\r
+ fontNameCB.addItem(fonts[i]);\r
+ }\r
+\r
+ for (int i = 1; i < 31; i++)\r
+ {\r
+ fontSizeCB.addItem(i + "");\r
+ }\r
+\r
+ fontStyleCB.addItem("plain");\r
+ fontStyleCB.addItem("bold");\r
+ fontStyleCB.addItem("italic");\r
+\r
+ fontNameCB.setSelectedItem(fontName);\r
+ fontSizeCB.setSelectedItem(fontSize);\r
+ fontStyleCB.setSelectedItem(fontStyle);\r
+\r
+ gapSymbolCB.addItem("-");\r
+ gapSymbolCB.addItem(".");\r
+\r
+ gapSymbolCB.setSelectedItem(gapSymbol + "");\r
+\r
+ startupCheckbox.setSelected(showStartupFile);\r
+ startupFileTextfield.setText(startupFile);\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ */\r
+ public static void initPreferences()\r
+ {\r
+ String string = Cache.getProperty("SHOW_FULL_ID");\r
+\r
+ if (string != null)\r
+ {\r
+ showFullId = Boolean.valueOf(string).booleanValue();\r
+ }\r
+\r
+ string = Cache.getProperty("SHOW_FULLSCREEN");\r
\r
+ if (string != null)\r
+ {\r
+ showFullscreen = Boolean.valueOf(string).booleanValue();\r
+ }\r
+\r
+ string = Cache.getProperty("SHOW_ANNOTATIONS");\r
+\r
+ if (string != null)\r
+ {\r
+ showAnnotation = Boolean.valueOf(string).booleanValue();\r
+ }\r
+\r
+ string = Cache.getProperty("SHOW_CONSERVATION");\r
+\r
+ if (string != null)\r
+ {\r
+ showConservation = Boolean.valueOf(string).booleanValue();\r
+ }\r
+\r
+ string = Cache.getProperty("SHOW_QUALITY");\r
+\r
+ if (string != null)\r
+ {\r
+ showQuality = Boolean.valueOf(string).booleanValue();\r
+ }\r
+\r
+ string = Cache.getProperty("SHOW_IDENTITY");\r
+\r
+ if (string != null)\r
+ {\r
+ showIdentity = Boolean.valueOf(string).booleanValue();\r
+ }\r
+\r
+ string = Cache.getProperty("GAP_SYMBOL");\r
+\r
+ if (string != null)\r
+ {\r
+ gapSymbol = string.charAt(0);\r
+ }\r
+\r
+ string = Cache.getProperty("SHOW_FULL_ID");\r
+\r
+ if (string != null)\r
+ {\r
+ showFullId = Boolean.valueOf(string).booleanValue();\r
+ }\r
+\r
+ string = Cache.getProperty("FONT_NAME");\r
+\r
+ if (string != null)\r
+ {\r
+ fontName = string;\r
+ }\r
+\r
+ string = Cache.getProperty("FONT_STYLE");\r
+\r
+ if (string != null)\r
+ {\r
+ fontStyle = string;\r
+ }\r
+\r
+ string = Cache.getProperty("FONT_SIZE");\r
+\r
+ if (string != null)\r
+ {\r
+ fontSize = string;\r
+ }\r
+\r
+ string = Cache.getProperty("DEFAULT_COLOUR");\r
+\r
+ if (string != null)\r
+ {\r
+ defaultColour = string;\r
+ }\r
+\r
+ string = Cache.getProperty("STARTUP_FILE");\r
+\r
+ if (string != null)\r
+ {\r
+ startupFile = string;\r
+ }\r
+\r
+ string = Cache.getProperty("SHOW_STARTUP_FILE");\r
+\r
+ if (string != null)\r
+ {\r
+ showStartupFile = Boolean.valueOf(string).booleanValue();\r
+ }\r
+\r
+ preferencesLoaded = true;\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
+ public void ok_actionPerformed(ActionEvent e)\r
+ {\r
+ showFullId = fullID.isSelected();\r
+ showFullscreen = fullScreen.isSelected();\r
+ showAnnotation = annotations.isSelected();\r
+ showConservation = conservation.isSelected();\r
+ showQuality = quality.isSelected();\r
+ showIdentity = identity.isSelected();\r
+ defaultColour = colour.getSelectedItem().toString();\r
+ gapSymbol = gapSymbolCB.getSelectedItem().toString().charAt(0);\r
+ fontName = fontNameCB.getSelectedItem().toString();\r
+ fontSize = fontSizeCB.getSelectedItem().toString();\r
+ fontStyle = fontStyleCB.getSelectedItem().toString();\r
+ startupFile = startupFileTextfield.getText();\r
+ showStartupFile = startupCheckbox.isSelected();\r
+\r
+ Cache.setProperty("SHOW_FULL_ID", Boolean.toString(showFullId));\r
+ Cache.setProperty("SHOW_FULLSCREEN", Boolean.toString(showFullscreen));\r
+\r
+ Cache.setProperty("SHOW_ANNOTATIONS", Boolean.toString(showAnnotation));\r
+ Cache.setProperty("SHOW_CONSERVATION",\r
+ Boolean.toString(showConservation));\r
+ Cache.setProperty("SHOW_QUALITY", Boolean.toString(showQuality));\r
+ Cache.setProperty("SHOW_IDENTITY", Boolean.toString(showIdentity));\r
+\r
+ Cache.setProperty("DEFAULT_COLOUR", defaultColour);\r
+ Cache.setProperty("GAP_SYMBOL", gapSymbol + "");\r
+\r
+ Cache.setProperty("FONT_NAME", fontName);\r
+ Cache.setProperty("FONT_STYLE", fontStyle);\r
+ Cache.setProperty("FONT_SIZE", fontSize);\r
+\r
+ Cache.setProperty("STARTUP_FILE", startupFile);\r
+ Cache.setProperty("SHOW_STARTUP_FILE", Boolean.toString(showStartupFile));\r
+\r
+ try\r
+ {\r
+ frame.setClosed(true);\r
+ }\r
+ catch (Exception ex)\r
+ {\r
+ }\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ */\r
+ public void startupFileTextfield_mouseClicked()\r
+ {\r
+ JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.getProperty(\r
+ "LAST_DIRECTORY"),\r
+ new String[]\r
+ {\r
+ "fa, fasta, fastq", "aln", "pfam", "msf", "pir", "blc",\r
+ "jar"\r
+ },\r
+ new String[]\r
+ {\r
+ "Fasta", "Clustal", "PFAM", "MSF", "PIR", "BLC", "Jalview"\r
+ }, jalview.bin.Cache.getProperty("DEFAULT_FILE_FORMAT"));\r
+ chooser.setFileView(new JalviewFileView());\r
+ chooser.setDialogTitle("Select startup file");\r
+\r
+ int value = chooser.showOpenDialog(this);\r
+\r
+ if (value == JalviewFileChooser.APPROVE_OPTION)\r
+ {\r
+ jalview.bin.Cache.setProperty("DEFAULT_FILE_FORMAT",\r
+ chooser.getSelectedFormat());\r
+ startupFileTextfield.setText(chooser.getSelectedFile()\r
+ .getAbsolutePath());\r
+ }\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
+ public void cancel_actionPerformed(ActionEvent e)\r
+ {\r
+ try\r
+ {\r
+ frame.setClosed(true);\r
+ }\r
+ catch (Exception ex)\r
+ {\r
+ }\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
+ public void annotations_actionPerformed(ActionEvent e)\r
+ {\r
+ conservation.setEnabled(annotations.isSelected());\r
+ quality.setEnabled(annotations.isSelected());\r
+ identity.setEnabled(annotations.isSelected());\r
+ }\r
}\r
git://source.jalview.org / jalview.git / blobdiff