Autocalculate consensus set in preferences

[jalview.git] / src / jalview / gui / Preferences.java

diff --git a/src/jalview/gui/Preferences.java b/src/jalview/gui/Preferences.java
index f322daa..8cbe03f 100755 (executable)
--- a/src/jalview/gui/Preferences.java
+++ b/src/jalview/gui/Preferences.java
@@ -150,6 +150,8 @@ public class Preferences extends GPreferences
         pileupjv.setSelected( Cache.getDefault("PILEUP_JVSUFFIX", true) );\r
         pirjv.setSelected( Cache.getDefault("PIR_JVSUFFIX", true) );\r
 \r
+        autoCalculateConsCheck.setSelected( Cache.getDefault("AUTO_CALC_CONSENSUS", true));\r
+\r
   /****************************************************\r
    * Set up Connections\r
    */\r
@@ -277,6 +279,8 @@ public class Preferences extends GPreferences
         Cache.applicationProperties.setProperty("PILEUP_JVSUFFIX", Boolean.toString(pileupjv.isSelected()) );\r
         Cache.applicationProperties.setProperty("PIR_JVSUFFIX", Boolean.toString(pirjv.isSelected()) );\r
 \r
+        Cache.applicationProperties.setProperty("AUTO_CALC_CONSENSUS",\r
+                                                Boolean.toString(autoCalculateConsCheck.isSelected()));\r
 \r
         Cache.saveProperties();\r
         try\r