Merge branch 'bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_...

[jalview.git] / src / jalview / gui / QuitHandler.java

diff --git a/src/jalview/gui/QuitHandler.java b/src/jalview/gui/QuitHandler.java
index ad7684e..1b48c6d 100644 (file)
--- a/src/jalview/gui/QuitHandler.java
+++ b/src/jalview/gui/QuitHandler.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.gui;
 
 import java.io.File;
@@ -162,7 +182,8 @@ public class QuitHandler
       qd.showDialogOnTopAsync(
               new StringBuilder(
                       MessageManager.getString("label.quit_jalview"))
-                      .append("\n").append(messageString).toString(),
+                              .append("\n").append(messageString)
+                              .toString(),
               MessageManager.getString("action.quit"),
               JOptionPane.YES_NO_OPTION, JOptionPane.QUESTION_MESSAGE, null,
               new Object[]
@@ -294,7 +315,7 @@ public class QuitHandler
       return QResponse.QUIT;
 
     int size = 0;
-    AlignFrame[] afArray = Desktop.getAlignFrames();
+    AlignFrame[] afArray = Desktop.getDesktopAlignFrames();
     if (!(afArray == null || afArray.length == 0))
     {
       for (int i = 0; i < afArray.length; i++)