AlignmentPanel ap;
- Stack<CommandI> historyList = new Stack<CommandI>();
+ Stack<CommandI> historyList = new Stack<>();
// simpler than synching with alignFrame.
Desktop.addInternalFrame(frame,
MessageManager
.getString("label.redundancy_threshold_selection"),
- 400, 100, false);
+ true, FRAME_WIDTH, FRAME_HEIGHT, false, true);
frame.addInternalFrameListener(new InternalFrameAdapter()
{
@Override
}
float value = slider.getValue();
- List<SequenceI> redundantSequences = new ArrayList<SequenceI>();
+ List<SequenceI> redundantSequences = new ArrayList<>();
for (int i = 0; i < redundancy.length; i++)
{
if (value <= redundancy[i])
@Override
public void applyButton_actionPerformed(ActionEvent e)
{
- Vector del = new Vector();
+ List<SequenceI> del = new ArrayList<>();
undoButton.setEnabled(true);
{
if (value <= redundancy[i])
{
- del.addElement(originalSequences[i]);
+ del.add(originalSequences[i]);
}
}
// This has to be done before the restoreHistoryItem method of alignFrame
- // will
- // actually restore these sequences.
+ // will actually restore these sequences.
if (del.size() > 0)
{
SequenceI[] deleted = new SequenceI[del.size()];
int width = 0;
for (int i = 0; i < del.size(); i++)
{
- deleted[i] = (SequenceI) del.elementAt(i);
+ deleted[i] = del.get(i);
if (deleted[i].getLength() > width)
{
width = deleted[i].getLength();
af.updateEditMenuBar();
}
- ap.paintAlignment(true);
+ ap.paintAlignment(true, true);
if (historyList.size() == 0)
{