\r
if(omitHidden==null)\r
{\r
- seqi = originalSequences[i].getSequence(start, end);\r
- seqj = originalSequences[j].getSequence(start, end);\r
+ seqi = originalSequences[i].getSequenceAsString(start, end);\r
+ seqj = originalSequences[j].getSequenceAsString(start, end);\r
}\r
else\r
{\r