/*\r
* Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
*\r
* This program is free software; you can redistribute it and/or\r
* modify it under the terms of the GNU General Public License\r
\r
import jalview.math.*;\r
\r
-import jalview.util.*;\r
-\r
import java.awt.*;\r
import java.awt.event.*;\r
\r
ToolTipManager.sharedInstance().registerComponent(this);\r
ToolTipManager.sharedInstance().setInitialDelay(0);\r
ToolTipManager.sharedInstance().setDismissDelay(10000);\r
- PaintRefresher.Register(this, av.alignment);\r
+ PaintRefresher.Register(this, av.getSequenceSetId());\r
\r
prefsize = getPreferredSize();\r
orig = new float[npoint][3];\r
\r
if (av.getSelectionGroup() != null)\r
{\r
- if (av.getSelectionGroup().sequences.contains(\r
+ if (av.getSelectionGroup().getSequences(false).contains(\r
((SequencePoint) points.elementAt(i)).sequence))\r
{\r
g.setColor(Color.gray);\r
if (av.getSelectionGroup() != null)\r
{\r
av.getSelectionGroup().addOrRemove(found, true);\r
- PaintRefresher.Refresh(this, av.alignment);\r
+ PaintRefresher.Refresh(this, av.getSequenceSetId());\r
}\r
else\r
{\r
*/\r
public void rectSelect(int x1, int y1, int x2, int y2)\r
{\r
- boolean changedSel = false;\r
-\r
for (int i = 0; i < npoint; i++)\r
{\r
SequencePoint sp = (SequencePoint) points.elementAt(i);\r
{\r
if (av != null)\r
{\r
- if (!av.getSelectionGroup().sequences.contains(sp.sequence))\r
+ if (!av.getSelectionGroup().getSequences(false).contains(sp.sequence))\r
{\r
- changedSel = true;\r
av.getSelectionGroup().addSequence(sp.sequence, true);\r
}\r
}\r